Hb_031012_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig31012: 36815-37777
Sequence    

Annotation

kegg
ID tcc:TCM_043349
description C2H2-type zinc finger family protein, putative
nr
ID XP_011031622.1
description PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
swissprot
ID Q681X4
description Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1
trembl
ID A0A067KE13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16179 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031012_030 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
2 Hb_004313_010 0.0191551386 - - PREDICTED: patatin-like protein 1 [Prunus mume]
3 Hb_186458_010 0.0510188326 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
4 Hb_005353_010 0.0583202966 - - Pectinesterase-1 precursor, putative [Ricinus communis]
5 Hb_000109_200 0.0657904639 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
6 Hb_017110_030 0.0852995251 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
7 Hb_000676_360 0.0886990992 - - hypothetical protein POPTR_0007s13690g [Populus trichocarpa]
8 Hb_000134_190 0.0888373978 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
9 Hb_007317_050 0.0890271544 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
10 Hb_083963_010 0.0900356517 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
11 Hb_023582_030 0.0948652509 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_004686_040 0.1032340896 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
13 Hb_000742_070 0.1033095138 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
14 Hb_000107_280 0.1039946699 - - serine/threonine protein kinase, putative [Ricinus communis]
15 Hb_000020_170 0.1073896985 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
16 Hb_000792_100 0.1075640491 - - PREDICTED: uncharacterized protein OsI_027940-like [Jatropha curcas]
17 Hb_002030_010 0.1152971839 - - hypothetical protein JCGZ_18681 [Jatropha curcas]
18 Hb_009847_010 0.1196316651 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
19 Hb_174639_010 0.1230795851 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_054316_010 0.1239622093 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]

Gene co-expression network

sample Hb_031012_030 Hb_031012_030 Hb_004313_010 Hb_004313_010 Hb_031012_030--Hb_004313_010 Hb_186458_010 Hb_186458_010 Hb_031012_030--Hb_186458_010 Hb_005353_010 Hb_005353_010 Hb_031012_030--Hb_005353_010 Hb_000109_200 Hb_000109_200 Hb_031012_030--Hb_000109_200 Hb_017110_030 Hb_017110_030 Hb_031012_030--Hb_017110_030 Hb_000676_360 Hb_000676_360 Hb_031012_030--Hb_000676_360 Hb_004313_010--Hb_186458_010 Hb_004313_010--Hb_017110_030 Hb_004313_010--Hb_000676_360 Hb_083963_010 Hb_083963_010 Hb_004313_010--Hb_083963_010 Hb_004313_010--Hb_005353_010 Hb_186458_010--Hb_017110_030 Hb_186458_010--Hb_083963_010 Hb_023582_030 Hb_023582_030 Hb_186458_010--Hb_023582_030 Hb_000742_070 Hb_000742_070 Hb_186458_010--Hb_000742_070 Hb_007317_050 Hb_007317_050 Hb_005353_010--Hb_007317_050 Hb_005353_010--Hb_000109_200 Hb_000792_100 Hb_000792_100 Hb_005353_010--Hb_000792_100 Hb_123713_010 Hb_123713_010 Hb_005353_010--Hb_123713_010 Hb_000020_170 Hb_000020_170 Hb_000109_200--Hb_000020_170 Hb_000109_200--Hb_007317_050 Hb_004686_040 Hb_004686_040 Hb_000109_200--Hb_004686_040 Hb_000134_190 Hb_000134_190 Hb_000109_200--Hb_000134_190 Hb_017110_030--Hb_000742_070 Hb_017110_030--Hb_083963_010 Hb_017110_030--Hb_023582_030 Hb_017110_030--Hb_000134_190 Hb_000933_030 Hb_000933_030 Hb_017110_030--Hb_000933_030 Hb_009847_010 Hb_009847_010 Hb_000676_360--Hb_009847_010 Hb_000847_090 Hb_000847_090 Hb_000676_360--Hb_000847_090 Hb_000375_220 Hb_000375_220 Hb_000676_360--Hb_000375_220 Hb_000676_360--Hb_186458_010 Hb_000556_060 Hb_000556_060 Hb_000676_360--Hb_000556_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.247242 0.34961 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0852352

CAGE analysis