Hb_031022_020

Information

Type -
Description -
Location Contig31022: 13149-14024
Sequence    

Annotation

kegg
ID tcc:TCM_016033
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32835: 13154-13760 , PASA_asmbl_32837: 14040-14944
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031022_020 0.0 - - -
2 Hb_000020_100 0.1325639524 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
3 Hb_000077_160 0.1528927467 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
4 Hb_002078_290 0.1610525219 - - PREDICTED: uncharacterized protein LOC100852520 [Vitis vinifera]
5 Hb_007044_090 0.1618032535 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
6 Hb_003849_190 0.1651788798 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
7 Hb_002374_270 0.1668349686 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000256_080 0.1711930938 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
9 Hb_006925_050 0.1724363482 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
10 Hb_118939_010 0.1751559606 - - protein binding protein, putative [Ricinus communis]
11 Hb_000922_320 0.175868044 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
12 Hb_029253_010 0.1770948077 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
13 Hb_005054_020 0.1777931441 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
14 Hb_002983_110 0.1803123578 - - PREDICTED: uncharacterized protein LOC105634780 [Jatropha curcas]
15 Hb_002235_060 0.1809761584 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
16 Hb_002450_030 0.1819059222 - - ATPP2-A13, putative [Ricinus communis]
17 Hb_002325_060 0.1829587762 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
18 Hb_091318_010 0.1840066573 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
19 Hb_000028_430 0.1851460207 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
20 Hb_000637_020 0.1854269298 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]

Gene co-expression network

sample Hb_031022_020 Hb_031022_020 Hb_000020_100 Hb_000020_100 Hb_031022_020--Hb_000020_100 Hb_000077_160 Hb_000077_160 Hb_031022_020--Hb_000077_160 Hb_002078_290 Hb_002078_290 Hb_031022_020--Hb_002078_290 Hb_007044_090 Hb_007044_090 Hb_031022_020--Hb_007044_090 Hb_003849_190 Hb_003849_190 Hb_031022_020--Hb_003849_190 Hb_002374_270 Hb_002374_270 Hb_031022_020--Hb_002374_270 Hb_000637_020 Hb_000637_020 Hb_000020_100--Hb_000637_020 Hb_084849_010 Hb_084849_010 Hb_000020_100--Hb_084849_010 Hb_002026_050 Hb_002026_050 Hb_000020_100--Hb_002026_050 Hb_000020_100--Hb_002078_290 Hb_118939_010 Hb_118939_010 Hb_000020_100--Hb_118939_010 Hb_000923_100 Hb_000923_100 Hb_000077_160--Hb_000923_100 Hb_000371_120 Hb_000371_120 Hb_000077_160--Hb_000371_120 Hb_000077_160--Hb_003849_190 Hb_000028_430 Hb_000028_430 Hb_000077_160--Hb_000028_430 Hb_000110_260 Hb_000110_260 Hb_000077_160--Hb_000110_260 Hb_000077_160--Hb_002078_290 Hb_002078_290--Hb_003849_190 Hb_002078_290--Hb_000028_430 Hb_002078_290--Hb_084849_010 Hb_004218_120 Hb_004218_120 Hb_002078_290--Hb_004218_120 Hb_005511_130 Hb_005511_130 Hb_007044_090--Hb_005511_130 Hb_000984_220 Hb_000984_220 Hb_007044_090--Hb_000984_220 Hb_029253_010 Hb_029253_010 Hb_007044_090--Hb_029253_010 Hb_006925_050 Hb_006925_050 Hb_007044_090--Hb_006925_050 Hb_003964_080 Hb_003964_080 Hb_007044_090--Hb_003964_080 Hb_000282_050 Hb_000282_050 Hb_007044_090--Hb_000282_050 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_023344_110 Hb_023344_110 Hb_003849_190--Hb_023344_110 Hb_000735_140 Hb_000735_140 Hb_003849_190--Hb_000735_140 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_002450_030 Hb_002450_030 Hb_003849_190--Hb_002450_030 Hb_000056_080 Hb_000056_080 Hb_003849_190--Hb_000056_080 Hb_002374_270--Hb_029253_010 Hb_002235_060 Hb_002235_060 Hb_002374_270--Hb_002235_060 Hb_000940_210 Hb_000940_210 Hb_002374_270--Hb_000940_210 Hb_002374_270--Hb_003964_080 Hb_003894_030 Hb_003894_030 Hb_002374_270--Hb_003894_030 Hb_005357_110 Hb_005357_110 Hb_002374_270--Hb_005357_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.254781 1.31126 2.20607 3.22761 0.0261999 0.0994278
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.599318 0.754073 0.515509 0.152165 1.04952

CAGE analysis