Hb_031022_030

Information

Type transcription factor
Description TF Family: NAC
Location Contig31022: 40854-42330
Sequence    

Annotation

kegg
ID rcu:RCOM_0195410
description NAC domain-containing protein, putative
nr
ID XP_012087129.1
description PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
swissprot
ID Q9FWX2
description NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2
trembl
ID R4NFS9
description NAC transcription factor 018 OS=Jatropha curcas GN=JCGZ_20782 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32839: 41478-42063
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031022_030 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
2 Hb_007221_020 0.0526426377 - - FAD-binding domain-containing family protein [Populus trichocarpa]
3 Hb_031321_020 0.055268059 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
4 Hb_001021_120 0.0713785227 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
5 Hb_024071_030 0.0716764339 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
6 Hb_007922_030 0.0778061277 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
7 Hb_000556_060 0.0787633552 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
8 Hb_009847_010 0.0789744893 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
9 Hb_009663_020 0.0795262284 - - -
10 Hb_000003_380 0.0813215734 - - conserved hypothetical protein [Ricinus communis]
11 Hb_132840_190 0.086558829 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
12 Hb_000134_130 0.0865776726 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
13 Hb_007120_120 0.0884998864 - - protein binding protein, putative [Ricinus communis]
14 Hb_000058_180 0.0903848728 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
15 Hb_001652_100 0.0927426818 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
16 Hb_163566_010 0.0967789609 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
17 Hb_000321_110 0.0968093177 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
18 Hb_004453_160 0.0971710461 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003376_020 0.0972091601 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_152910_050 0.0975617278 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_031022_030 Hb_031022_030 Hb_007221_020 Hb_007221_020 Hb_031022_030--Hb_007221_020 Hb_031321_020 Hb_031321_020 Hb_031022_030--Hb_031321_020 Hb_001021_120 Hb_001021_120 Hb_031022_030--Hb_001021_120 Hb_024071_030 Hb_024071_030 Hb_031022_030--Hb_024071_030 Hb_007922_030 Hb_007922_030 Hb_031022_030--Hb_007922_030 Hb_000556_060 Hb_000556_060 Hb_031022_030--Hb_000556_060 Hb_007221_020--Hb_031321_020 Hb_007221_020--Hb_007922_030 Hb_132840_190 Hb_132840_190 Hb_007221_020--Hb_132840_190 Hb_004453_160 Hb_004453_160 Hb_007221_020--Hb_004453_160 Hb_019516_010 Hb_019516_010 Hb_007221_020--Hb_019516_010 Hb_031321_020--Hb_001021_120 Hb_031321_020--Hb_007922_030 Hb_000134_130 Hb_000134_130 Hb_031321_020--Hb_000134_130 Hb_000331_170 Hb_000331_170 Hb_031321_020--Hb_000331_170 Hb_000009_270 Hb_000009_270 Hb_001021_120--Hb_000009_270 Hb_001021_120--Hb_000134_130 Hb_001021_120--Hb_007922_030 Hb_152910_050 Hb_152910_050 Hb_001021_120--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_001021_120--Hb_098315_060 Hb_009663_020 Hb_009663_020 Hb_024071_030--Hb_009663_020 Hb_007120_120 Hb_007120_120 Hb_024071_030--Hb_007120_120 Hb_024071_030--Hb_000556_060 Hb_163566_010 Hb_163566_010 Hb_024071_030--Hb_163566_010 Hb_000321_110 Hb_000321_110 Hb_024071_030--Hb_000321_110 Hb_009847_010 Hb_009847_010 Hb_024071_030--Hb_009847_010 Hb_008021_060 Hb_008021_060 Hb_007922_030--Hb_008021_060 Hb_001652_100 Hb_001652_100 Hb_007922_030--Hb_001652_100 Hb_000058_180 Hb_000058_180 Hb_007922_030--Hb_000058_180 Hb_000556_060--Hb_009847_010 Hb_000847_090 Hb_000847_090 Hb_000556_060--Hb_000847_090 Hb_007044_240 Hb_007044_240 Hb_000556_060--Hb_007044_240 Hb_000556_060--Hb_009663_020 Hb_000556_060--Hb_007120_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0186753 0.912519 0.877153 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.495027

CAGE analysis