Hb_031042_040

Information

Type transcription factor
Description TF Family: C2H2
Location Contig31042: 36811-37782
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15790g
description hypothetical protein
nr
ID XP_012069986.1
description PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
swissprot
ID Q9SHD0
description Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1
trembl
ID A0A067L5V0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03406 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein zat4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32851: 36825-38018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031042_040 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
2 Hb_002955_030 0.1013845747 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010174_130 0.104772823 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
4 Hb_002377_040 0.1085525712 - - serine/threonine protein kinase, putative [Ricinus communis]
5 Hb_002716_150 0.1089276974 - - starch synthase isoform I [Manihot esculenta]
6 Hb_000085_340 0.1161392397 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
7 Hb_000034_140 0.1192626156 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Jatropha curcas]
8 Hb_002506_010 0.123804317 - - choline transporter-related family protein [Populus trichocarpa]
9 Hb_001001_160 0.1269830399 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
10 Hb_135810_010 0.1275383281 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
11 Hb_000028_470 0.1283067332 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
12 Hb_000028_050 0.129799445 - - aldose-1-epimerase, putative [Ricinus communis]
13 Hb_005754_020 0.1307576205 - - PREDICTED: mitogen-activated protein kinase homolog NTF4 [Jatropha curcas]
14 Hb_000138_190 0.1311713033 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
15 Hb_002067_160 0.1340009705 - - Protein MLO, putative [Ricinus communis]
16 Hb_003055_050 0.1352008621 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
17 Hb_094437_070 0.1368088191 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
18 Hb_000003_650 0.1369770698 - - malic enzyme, putative [Ricinus communis]
19 Hb_003352_050 0.1370768089 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
20 Hb_002659_140 0.1378913168 - - hypothetical protein JCGZ_08031 [Jatropha curcas]

Gene co-expression network

sample Hb_031042_040 Hb_031042_040 Hb_002955_030 Hb_002955_030 Hb_031042_040--Hb_002955_030 Hb_010174_130 Hb_010174_130 Hb_031042_040--Hb_010174_130 Hb_002377_040 Hb_002377_040 Hb_031042_040--Hb_002377_040 Hb_002716_150 Hb_002716_150 Hb_031042_040--Hb_002716_150 Hb_000085_340 Hb_000085_340 Hb_031042_040--Hb_000085_340 Hb_000034_140 Hb_000034_140 Hb_031042_040--Hb_000034_140 Hb_001504_170 Hb_001504_170 Hb_002955_030--Hb_001504_170 Hb_000345_560 Hb_000345_560 Hb_002955_030--Hb_000345_560 Hb_003055_050 Hb_003055_050 Hb_002955_030--Hb_003055_050 Hb_000028_050 Hb_000028_050 Hb_002955_030--Hb_000028_050 Hb_002955_030--Hb_002377_040 Hb_001001_160 Hb_001001_160 Hb_010174_130--Hb_001001_160 Hb_002506_010 Hb_002506_010 Hb_010174_130--Hb_002506_010 Hb_000696_110 Hb_000696_110 Hb_010174_130--Hb_000696_110 Hb_003404_030 Hb_003404_030 Hb_010174_130--Hb_003404_030 Hb_000029_030 Hb_000029_030 Hb_010174_130--Hb_000029_030 Hb_000025_200 Hb_000025_200 Hb_010174_130--Hb_000025_200 Hb_000062_230 Hb_000062_230 Hb_002377_040--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002377_040--Hb_005754_020 Hb_002044_090 Hb_002044_090 Hb_002377_040--Hb_002044_090 Hb_003352_050 Hb_003352_050 Hb_002377_040--Hb_003352_050 Hb_000028_470 Hb_000028_470 Hb_002377_040--Hb_000028_470 Hb_002377_040--Hb_000085_340 Hb_135810_010 Hb_135810_010 Hb_002716_150--Hb_135810_010 Hb_014568_030 Hb_014568_030 Hb_002716_150--Hb_014568_030 Hb_001855_010 Hb_001855_010 Hb_002716_150--Hb_001855_010 Hb_002716_150--Hb_003055_050 Hb_003376_100 Hb_003376_100 Hb_002716_150--Hb_003376_100 Hb_002067_160 Hb_002067_160 Hb_000085_340--Hb_002067_160 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_026048_090 Hb_026048_090 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140 Hb_000836_630 Hb_000836_630 Hb_000034_140--Hb_000836_630 Hb_141939_010 Hb_141939_010 Hb_000034_140--Hb_141939_010 Hb_000761_020 Hb_000761_020 Hb_000034_140--Hb_000761_020 Hb_000001_020 Hb_000001_020 Hb_000034_140--Hb_000001_020 Hb_000329_390 Hb_000329_390 Hb_000034_140--Hb_000329_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.262 2.51966 16.0129 18.6671 85.2244 90.6691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.749 30.2284 62.8164 5.48412 14.6691

CAGE analysis