Hb_031042_050

Information

Type -
Description -
Location Contig31042: 44725-52746
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15800g
description hypothetical protein
nr
ID XP_012069984.1
description PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
swissprot
ID Q9FGK8
description Protein transport protein SEC16B homolog OS=Arabidopsis thaliana GN=SEC16B PE=1 SV=1
trembl
ID A0A067L6Z7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03405 PE=4 SV=1
Gene Ontology
ID GO:0000139
description protein transport protein sec16b homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32853: 45453-45856 , PASA_asmbl_32854: 45935-46300 , PASA_asmbl_32855: 46486-46677 , PASA_asmbl_32857: 50328-50667 , PASA_asmbl_32858: 51937-52643
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031042_050 0.0 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
2 Hb_000028_130 0.044850929 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
3 Hb_001322_130 0.0472816389 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
4 Hb_000069_470 0.0515165032 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
5 Hb_002253_080 0.0542269979 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
6 Hb_001545_150 0.0551855931 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
7 Hb_004410_120 0.0569083768 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
8 Hb_007810_110 0.0579383127 - - PREDICTED: DNA/RNA-binding protein KIN17 [Jatropha curcas]
9 Hb_000479_070 0.0600094623 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
10 Hb_159558_010 0.0609713469 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
11 Hb_001473_110 0.0615975315 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
12 Hb_001089_050 0.0625731661 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
13 Hb_000402_230 0.0627088051 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
14 Hb_002205_250 0.0628862847 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
15 Hb_001279_120 0.0636261959 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
16 Hb_003494_020 0.0660589399 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
17 Hb_000025_280 0.0669149213 transcription factor TF Family: C3H hypothetical protein JCGZ_07432 [Jatropha curcas]
18 Hb_001716_020 0.0676057024 - - hydrolase, putative [Ricinus communis]
19 Hb_003729_030 0.0687191759 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
20 Hb_143766_060 0.0688955427 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]

Gene co-expression network

sample Hb_031042_050 Hb_031042_050 Hb_000028_130 Hb_000028_130 Hb_031042_050--Hb_000028_130 Hb_001322_130 Hb_001322_130 Hb_031042_050--Hb_001322_130 Hb_000069_470 Hb_000069_470 Hb_031042_050--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_031042_050--Hb_002253_080 Hb_001545_150 Hb_001545_150 Hb_031042_050--Hb_001545_150 Hb_004410_120 Hb_004410_120 Hb_031042_050--Hb_004410_120 Hb_001635_120 Hb_001635_120 Hb_000028_130--Hb_001635_120 Hb_000017_220 Hb_000017_220 Hb_000028_130--Hb_000017_220 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_001473_110 Hb_001473_110 Hb_000028_130--Hb_001473_110 Hb_003494_020 Hb_003494_020 Hb_000028_130--Hb_003494_020 Hb_001322_130--Hb_002253_080 Hb_000866_460 Hb_000866_460 Hb_001322_130--Hb_000866_460 Hb_002267_140 Hb_002267_140 Hb_001322_130--Hb_002267_140 Hb_000243_210 Hb_000243_210 Hb_001322_130--Hb_000243_210 Hb_019430_020 Hb_019430_020 Hb_001322_130--Hb_019430_020 Hb_011242_060 Hb_011242_060 Hb_000069_470--Hb_011242_060 Hb_006117_080 Hb_006117_080 Hb_000069_470--Hb_006117_080 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_001104_190 Hb_001104_190 Hb_000069_470--Hb_001104_190 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002253_080--Hb_001767_140 Hb_002253_080--Hb_002267_140 Hb_002615_090 Hb_002615_090 Hb_002253_080--Hb_002615_090 Hb_000479_070 Hb_000479_070 Hb_001545_150--Hb_000479_070 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_000402_230 Hb_000402_230 Hb_001545_150--Hb_000402_230 Hb_003918_030 Hb_003918_030 Hb_001545_150--Hb_003918_030 Hb_001279_120 Hb_001279_120 Hb_001545_150--Hb_001279_120 Hb_013358_010 Hb_013358_010 Hb_004410_120--Hb_013358_010 Hb_012055_040 Hb_012055_040 Hb_004410_120--Hb_012055_040 Hb_000037_220 Hb_000037_220 Hb_004410_120--Hb_000037_220 Hb_004410_120--Hb_001322_130 Hb_000174_290 Hb_000174_290 Hb_004410_120--Hb_000174_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0188 26.93 12.6816 17.3879 15.0512 16.3137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.01536 9.87425 14.823 14.3764 18.216

CAGE analysis