Hb_031042_070

Information

Type -
Description -
Location Contig31042: 60209-67513
Sequence    

Annotation

kegg
ID rcu:RCOM_1060520
description hypothetical protein
nr
ID XP_002528918.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSE9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1060520 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna helicase ino80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32860: 60666-60906 , PASA_asmbl_32861: 63594-63875 , PASA_asmbl_32862: 65110-65298 , PASA_asmbl_32863: 66215-66347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031042_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001633_040 0.0430773278 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
3 Hb_033883_060 0.0434574182 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
4 Hb_007982_070 0.0617837337 - - PREDICTED: protein CPR-5 [Jatropha curcas]
5 Hb_000300_360 0.0709568965 - - PREDICTED: exosome component 10 [Jatropha curcas]
6 Hb_002163_010 0.0722441877 - - PREDICTED: UBA and UBX domain-containing protein At4g15410 [Jatropha curcas]
7 Hb_007632_020 0.0731497215 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
8 Hb_030565_090 0.0743449137 - - PREDICTED: DNA repair protein RAD50 [Jatropha curcas]
9 Hb_004920_130 0.0748115457 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
10 Hb_000002_040 0.0749698237 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
11 Hb_003020_110 0.0767400966 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
12 Hb_017075_030 0.0770955267 - - helicase, putative [Ricinus communis]
13 Hb_000406_240 0.0792617979 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
14 Hb_002659_060 0.0792814249 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
15 Hb_001157_180 0.0794072387 - - protein binding protein, putative [Ricinus communis]
16 Hb_000343_210 0.0819432557 - - ran-binding protein, putative [Ricinus communis]
17 Hb_003299_070 0.0820270001 - - AMP deaminase [Theobroma cacao]
18 Hb_007558_120 0.0852763758 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
19 Hb_147737_010 0.0855553998 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
20 Hb_001235_200 0.0862473148 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_031042_070 Hb_031042_070 Hb_001633_040 Hb_001633_040 Hb_031042_070--Hb_001633_040 Hb_033883_060 Hb_033883_060 Hb_031042_070--Hb_033883_060 Hb_007982_070 Hb_007982_070 Hb_031042_070--Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_031042_070--Hb_000300_360 Hb_002163_010 Hb_002163_010 Hb_031042_070--Hb_002163_010 Hb_007632_020 Hb_007632_020 Hb_031042_070--Hb_007632_020 Hb_001633_040--Hb_033883_060 Hb_001633_040--Hb_000300_360 Hb_001633_040--Hb_007982_070 Hb_001633_040--Hb_002163_010 Hb_030565_090 Hb_030565_090 Hb_001633_040--Hb_030565_090 Hb_004635_050 Hb_004635_050 Hb_033883_060--Hb_004635_050 Hb_017075_030 Hb_017075_030 Hb_033883_060--Hb_017075_030 Hb_004920_130 Hb_004920_130 Hb_033883_060--Hb_004920_130 Hb_002659_060 Hb_002659_060 Hb_033883_060--Hb_002659_060 Hb_007982_070--Hb_000300_360 Hb_000406_240 Hb_000406_240 Hb_007982_070--Hb_000406_240 Hb_000270_460 Hb_000270_460 Hb_007982_070--Hb_000270_460 Hb_007558_120 Hb_007558_120 Hb_007982_070--Hb_007558_120 Hb_032202_110 Hb_032202_110 Hb_007982_070--Hb_032202_110 Hb_000796_190 Hb_000796_190 Hb_000300_360--Hb_000796_190 Hb_140049_020 Hb_140049_020 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_000300_360--Hb_007558_120 Hb_000594_040 Hb_000594_040 Hb_002163_010--Hb_000594_040 Hb_003299_070 Hb_003299_070 Hb_002163_010--Hb_003299_070 Hb_003935_030 Hb_003935_030 Hb_002163_010--Hb_003935_030 Hb_001454_320 Hb_001454_320 Hb_002163_010--Hb_001454_320 Hb_011609_080 Hb_011609_080 Hb_007632_020--Hb_011609_080 Hb_007590_080 Hb_007590_080 Hb_007632_020--Hb_007590_080 Hb_026099_010 Hb_026099_010 Hb_007632_020--Hb_026099_010 Hb_010931_080 Hb_010931_080 Hb_007632_020--Hb_010931_080 Hb_004370_030 Hb_004370_030 Hb_007632_020--Hb_004370_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2651 10.8289 4.73163 3.47586 11.0706 11.9297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.99378 4.24319 4.89205 7.65153 4.43925

CAGE analysis