Hb_031073_010

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig31073: 8276-10681
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31660g
description POPTRDRAFT_175065; hypothetical protein
nr
ID XP_012075316.1
description PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
swissprot
ID Q39117
description Trihelix transcription factor GT-2 OS=Arabidopsis thaliana GN=GT-2 PE=2 SV=1
trembl
ID A0A067KGU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09486 PE=4 SV=1
Gene Ontology
ID GO:0003677
description trihelix transcription factor gt-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32915: 8287-10593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031073_010 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
2 Hb_000161_100 0.1367063193 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
3 Hb_000544_120 0.1438404512 - - PREDICTED: thymidylate kinase [Jatropha curcas]
4 Hb_005228_120 0.1641013364 - - phospholipase d beta, putative [Ricinus communis]
5 Hb_002897_040 0.1643942686 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
6 Hb_008406_130 0.1683604228 - - -
7 Hb_004712_110 0.1684892788 - - 30S ribosomal protein S10, putative [Ricinus communis]
8 Hb_002903_120 0.1709864882 - - -
9 Hb_000173_210 0.1713174945 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
10 Hb_003673_020 0.1758187784 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
11 Hb_000211_080 0.1772818932 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
12 Hb_035360_010 0.17856654 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
13 Hb_000040_050 0.1799999514 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
14 Hb_000101_210 0.1819329363 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
15 Hb_000038_150 0.1824040602 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
16 Hb_000619_070 0.1826901678 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
17 Hb_007044_010 0.1833555611 - - -
18 Hb_004007_150 0.1835178737 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
19 Hb_000018_160 0.1843302695 - - nitrate transporter, putative [Ricinus communis]
20 Hb_006631_010 0.1856988806 - - plasma membrane aquaporin 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_031073_010 Hb_031073_010 Hb_000161_100 Hb_000161_100 Hb_031073_010--Hb_000161_100 Hb_000544_120 Hb_000544_120 Hb_031073_010--Hb_000544_120 Hb_005228_120 Hb_005228_120 Hb_031073_010--Hb_005228_120 Hb_002897_040 Hb_002897_040 Hb_031073_010--Hb_002897_040 Hb_008406_130 Hb_008406_130 Hb_031073_010--Hb_008406_130 Hb_004712_110 Hb_004712_110 Hb_031073_010--Hb_004712_110 Hb_000211_080 Hb_000211_080 Hb_000161_100--Hb_000211_080 Hb_000156_030 Hb_000156_030 Hb_000161_100--Hb_000156_030 Hb_003673_020 Hb_003673_020 Hb_000161_100--Hb_003673_020 Hb_000018_160 Hb_000018_160 Hb_000161_100--Hb_000018_160 Hb_000005_320 Hb_000005_320 Hb_000161_100--Hb_000005_320 Hb_006631_010 Hb_006631_010 Hb_000544_120--Hb_006631_010 Hb_035360_010 Hb_035360_010 Hb_000544_120--Hb_035360_010 Hb_000619_070 Hb_000619_070 Hb_000544_120--Hb_000619_070 Hb_000544_120--Hb_002897_040 Hb_000173_210 Hb_000173_210 Hb_000544_120--Hb_000173_210 Hb_000544_120--Hb_000018_160 Hb_000940_040 Hb_000940_040 Hb_005228_120--Hb_000940_040 Hb_005228_120--Hb_000173_210 Hb_001946_360 Hb_001946_360 Hb_005228_120--Hb_001946_360 Hb_000540_140 Hb_000540_140 Hb_005228_120--Hb_000540_140 Hb_000827_080 Hb_000827_080 Hb_005228_120--Hb_000827_080 Hb_000608_340 Hb_000608_340 Hb_005228_120--Hb_000608_340 Hb_002897_040--Hb_006631_010 Hb_002897_040--Hb_000173_210 Hb_000849_150 Hb_000849_150 Hb_002897_040--Hb_000849_150 Hb_000025_750 Hb_000025_750 Hb_002897_040--Hb_000025_750 Hb_000173_370 Hb_000173_370 Hb_002897_040--Hb_000173_370 Hb_003243_020 Hb_003243_020 Hb_008406_130--Hb_003243_020 Hb_099698_010 Hb_099698_010 Hb_008406_130--Hb_099698_010 Hb_045502_010 Hb_045502_010 Hb_008406_130--Hb_045502_010 Hb_008406_130--Hb_000544_120 Hb_000040_050 Hb_000040_050 Hb_008406_130--Hb_000040_050 Hb_004712_110--Hb_099698_010 Hb_004712_110--Hb_000040_050 Hb_004712_110--Hb_000173_210 Hb_004712_110--Hb_005228_120 Hb_001534_070 Hb_001534_070 Hb_004712_110--Hb_001534_070 Hb_004712_110--Hb_000940_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
167.071 30.6065 20.5231 6.94584 306.821 115.021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0844 8.87639 12.199 24.9684 23.1798

CAGE analysis