Hb_031089_010

Information

Type -
Description -
Location Contig31089: 4710-9220
Sequence    

Annotation

kegg
ID rcu:RCOM_1059670
description DNA binding protein, putative
nr
ID XP_002528710.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRR8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1059670 PE=4 SV=1
Gene Ontology
ID GO:0006979
description flocculation protein flo11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32919: 4864-5813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031089_010 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_133271_020 0.0881287401 - - prohibitin, putative [Ricinus communis]
3 Hb_001030_120 0.0882221485 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
4 Hb_000017_120 0.0886208717 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
5 Hb_134226_010 0.0892472679 - - 40S ribosomal protein S21e, putative [Ricinus communis]
6 Hb_158092_070 0.0909945335 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
7 Hb_159558_030 0.0934257517 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
8 Hb_000975_290 0.0954422413 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
9 Hb_004223_130 0.0956280471 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000784_090 0.0959238293 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
11 Hb_024835_030 0.0975620462 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
12 Hb_009382_020 0.0989490285 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
13 Hb_002119_060 0.0993579758 transcription factor TF Family: Orphans histidine kinase 1, 2, 3 plant, putative [Ricinus communis]
14 Hb_001518_020 0.0996925568 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
15 Hb_000856_340 0.1001178825 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
16 Hb_002272_250 0.1003958843 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002686_270 0.1017622275 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002553_020 0.1020053897 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001767_100 0.1022334988 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
20 Hb_002762_060 0.1030669895 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_031089_010 Hb_031089_010 Hb_133271_020 Hb_133271_020 Hb_031089_010--Hb_133271_020 Hb_001030_120 Hb_001030_120 Hb_031089_010--Hb_001030_120 Hb_000017_120 Hb_000017_120 Hb_031089_010--Hb_000017_120 Hb_134226_010 Hb_134226_010 Hb_031089_010--Hb_134226_010 Hb_158092_070 Hb_158092_070 Hb_031089_010--Hb_158092_070 Hb_159558_030 Hb_159558_030 Hb_031089_010--Hb_159558_030 Hb_133271_020--Hb_158092_070 Hb_004662_030 Hb_004662_030 Hb_133271_020--Hb_004662_030 Hb_000975_290 Hb_000975_290 Hb_133271_020--Hb_000975_290 Hb_133271_020--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_133271_020--Hb_002686_270 Hb_004223_130 Hb_004223_130 Hb_133271_020--Hb_004223_130 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_001030_120--Hb_002686_270 Hb_009111_050 Hb_009111_050 Hb_001030_120--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_005062_070 Hb_005062_070 Hb_001030_120--Hb_005062_070 Hb_028872_140 Hb_028872_140 Hb_001030_120--Hb_028872_140 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_000017_120--Hb_001030_120 Hb_012340_030 Hb_012340_030 Hb_000017_120--Hb_012340_030 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_002272_250 Hb_002272_250 Hb_000017_120--Hb_002272_250 Hb_000847_070 Hb_000847_070 Hb_134226_010--Hb_000847_070 Hb_134226_010--Hb_133271_020 Hb_118977_020 Hb_118977_020 Hb_134226_010--Hb_118977_020 Hb_003688_100 Hb_003688_100 Hb_134226_010--Hb_003688_100 Hb_001514_020 Hb_001514_020 Hb_134226_010--Hb_001514_020 Hb_001221_230 Hb_001221_230 Hb_134226_010--Hb_001221_230 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_158092_070--Hb_001030_120 Hb_158092_070--Hb_000975_290 Hb_000500_130 Hb_000500_130 Hb_159558_030--Hb_000500_130 Hb_002400_220 Hb_002400_220 Hb_159558_030--Hb_002400_220 Hb_000272_100 Hb_000272_100 Hb_159558_030--Hb_000272_100 Hb_006569_020 Hb_006569_020 Hb_159558_030--Hb_006569_020 Hb_159558_030--Hb_158092_070 Hb_002553_020 Hb_002553_020 Hb_159558_030--Hb_002553_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.11461 2.14665 0.798089 2.25823 6.68137 6.9911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.6628 6.076 5.5116 2.57064 0.357158

CAGE analysis