Hb_031089_020

Information

Type -
Description -
Location Contig31089: 15879-18140
Sequence    

Annotation

kegg
ID rcu:RCOM_1059360
description Nodulation receptor kinase precursor, putative (EC:2.7.11.26)
nr
ID XP_002528709.1
description Nodulation receptor kinase precursor, putative [Ricinus communis]
swissprot
ID Q9LVM0
description Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=2 SV=1
trembl
ID B9SRR7
description Nodulation receptor kinase, putative OS=Ricinus communis GN=RCOM_1059360 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable inactive receptor kinase at5g58300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32922: 16745-17727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031089_020 0.0 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
2 Hb_003470_110 0.0943665882 - - unnamed protein product [Vitis vinifera]
3 Hb_084147_010 0.1105313272 - - amino acid transporter, putative [Ricinus communis]
4 Hb_001922_030 0.1199985867 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
5 Hb_004241_110 0.123447528 - - Minor allergen Alt a, putative [Ricinus communis]
6 Hb_002200_070 0.1298023604 - - PREDICTED: endoglucanase 9-like [Populus euphratica]
7 Hb_030565_100 0.1323022526 - - serine hydroxymethyltransferase, putative [Ricinus communis]
8 Hb_061222_010 0.1338017033 - - hypothetical protein RCOM_0012650 [Ricinus communis]
9 Hb_001102_160 0.1369325644 - - PREDICTED: galacturonokinase [Jatropha curcas]
10 Hb_000920_160 0.1380835923 - - annexin [Manihot esculenta]
11 Hb_029223_040 0.1414005382 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
12 Hb_026527_010 0.1439506777 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
13 Hb_005784_060 0.1469003128 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
14 Hb_158092_040 0.1478462269 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
15 Hb_000025_160 0.1496855722 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
16 Hb_006615_230 0.1513536085 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
17 Hb_001898_140 0.1524240868 - - hypothetical protein AMTR_s00071p00184460 [Amborella trichopoda]
18 Hb_001329_180 0.1531649635 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
19 Hb_007590_100 0.1550410889 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
20 Hb_010883_180 0.1565464755 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_031089_020 Hb_031089_020 Hb_003470_110 Hb_003470_110 Hb_031089_020--Hb_003470_110 Hb_084147_010 Hb_084147_010 Hb_031089_020--Hb_084147_010 Hb_001922_030 Hb_001922_030 Hb_031089_020--Hb_001922_030 Hb_004241_110 Hb_004241_110 Hb_031089_020--Hb_004241_110 Hb_002200_070 Hb_002200_070 Hb_031089_020--Hb_002200_070 Hb_030565_100 Hb_030565_100 Hb_031089_020--Hb_030565_100 Hb_000236_180 Hb_000236_180 Hb_003470_110--Hb_000236_180 Hb_098795_030 Hb_098795_030 Hb_003470_110--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_003470_110--Hb_006615_230 Hb_003470_110--Hb_084147_010 Hb_003470_110--Hb_030565_100 Hb_084147_010--Hb_004241_110 Hb_001102_160 Hb_001102_160 Hb_084147_010--Hb_001102_160 Hb_012395_110 Hb_012395_110 Hb_084147_010--Hb_012395_110 Hb_084147_010--Hb_030565_100 Hb_000920_160 Hb_000920_160 Hb_001922_030--Hb_000920_160 Hb_001329_180 Hb_001329_180 Hb_001922_030--Hb_001329_180 Hb_000120_940 Hb_000120_940 Hb_001922_030--Hb_000120_940 Hb_026527_010 Hb_026527_010 Hb_001922_030--Hb_026527_010 Hb_000463_120 Hb_000463_120 Hb_001922_030--Hb_000463_120 Hb_004241_110--Hb_012395_110 Hb_003001_130 Hb_003001_130 Hb_004241_110--Hb_003001_130 Hb_007894_070 Hb_007894_070 Hb_004241_110--Hb_007894_070 Hb_000227_280 Hb_000227_280 Hb_004241_110--Hb_000227_280 Hb_001318_100 Hb_001318_100 Hb_004241_110--Hb_001318_100 Hb_001621_100 Hb_001621_100 Hb_002200_070--Hb_001621_100 Hb_000861_100 Hb_000861_100 Hb_002200_070--Hb_000861_100 Hb_003371_070 Hb_003371_070 Hb_002200_070--Hb_003371_070 Hb_000057_130 Hb_000057_130 Hb_002200_070--Hb_000057_130 Hb_002200_070--Hb_003470_110 Hb_000077_100 Hb_000077_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_030565_100--Hb_000236_180 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.08841 0.931907 1.53976 5.75306 0.0195188 0.0302366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.521373 0.354285 0.247218 1.2023 1.96773

CAGE analysis