Hb_031089_030

Information

Type -
Description -
Location Contig31089: 19565-29329
Sequence    

Annotation

kegg
ID mus:103981527
description ubiquitin-conjugating enzyme E2 28 isoform X1
nr
ID NP_001154446.1
description ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
swissprot
ID Q94F47
description Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1
trembl
ID F4I5B8
description Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=3 SV=1
Gene Ontology
ID GO:0005737
description ubiquitin-conjugating enzyme e2 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32923: 19783-29271 , PASA_asmbl_32924: 19841-29271
cDNA
(Sanger)
(ID:Location)		 003_O05.ab1: 19841-29077 , 004_P14.ab1: 19837-29066 , 006_E13.ab1: 19835-28876 , 007_I16.ab1: 19835-29135 , 022_E04.ab1: 19838-28011 , 023_C09.ab1: 19835-29009 , 024_C15.ab1: 19837-29059 , 026_M01.ab1: 19841-29035 , 028_D08.ab1: 19835-29092 , 036_C07.ab1: 19837-29021 , 041_J17.ab1: 19837-29088

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031089_030 0.0 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
2 Hb_007257_050 0.0959659199 - - protein with unknown function [Ricinus communis]
3 Hb_003299_080 0.1111040925 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
4 Hb_084429_010 0.117175815 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
5 Hb_001396_260 0.1205961775 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
6 Hb_000375_370 0.1242038718 - - Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor, putative [Ricinus communis]
7 Hb_001247_140 0.1261151078 - - -
8 Hb_002609_010 0.1313455249 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
9 Hb_010584_010 0.142906281 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
10 Hb_001247_230 0.1481108882 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_026437_010 0.1505538969 - - -
12 Hb_003157_010 0.1521759856 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
13 Hb_000808_070 0.1523766193 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
14 Hb_000265_250 0.1528238074 - - auxilin, putative [Ricinus communis]
15 Hb_003349_010 0.152857489 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
16 Hb_003633_140 0.1528962103 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
17 Hb_148209_020 0.154605912 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
18 Hb_006501_020 0.1546772117 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
19 Hb_002849_080 0.1567929462 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
20 Hb_000617_040 0.1569740232 - - PREDICTED: uncharacterized protein LOC105647487 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_031089_030 Hb_031089_030 Hb_007257_050 Hb_007257_050 Hb_031089_030--Hb_007257_050 Hb_003299_080 Hb_003299_080 Hb_031089_030--Hb_003299_080 Hb_084429_010 Hb_084429_010 Hb_031089_030--Hb_084429_010 Hb_001396_260 Hb_001396_260 Hb_031089_030--Hb_001396_260 Hb_000375_370 Hb_000375_370 Hb_031089_030--Hb_000375_370 Hb_001247_140 Hb_001247_140 Hb_031089_030--Hb_001247_140 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_009028_030 Hb_009028_030 Hb_007257_050--Hb_009028_030 Hb_000265_250 Hb_000265_250 Hb_007257_050--Hb_000265_250 Hb_003349_010 Hb_003349_010 Hb_007257_050--Hb_003349_010 Hb_003157_010 Hb_003157_010 Hb_007257_050--Hb_003157_010 Hb_003299_080--Hb_001247_140 Hb_013753_010 Hb_013753_010 Hb_003299_080--Hb_013753_010 Hb_005038_020 Hb_005038_020 Hb_003299_080--Hb_005038_020 Hb_002609_010 Hb_002609_010 Hb_003299_080--Hb_002609_010 Hb_002078_420 Hb_002078_420 Hb_003299_080--Hb_002078_420 Hb_084429_010--Hb_001396_260 Hb_004096_080 Hb_004096_080 Hb_084429_010--Hb_004096_080 Hb_084429_010--Hb_007257_050 Hb_084429_010--Hb_000375_370 Hb_002849_080 Hb_002849_080 Hb_084429_010--Hb_002849_080 Hb_015763_020 Hb_015763_020 Hb_001396_260--Hb_015763_020 Hb_001396_260--Hb_004096_080 Hb_001396_260--Hb_003157_010 Hb_001396_260--Hb_009028_030 Hb_005122_060 Hb_005122_060 Hb_000375_370--Hb_005122_060 Hb_000375_370--Hb_001247_140 Hb_006816_410 Hb_006816_410 Hb_000375_370--Hb_006816_410 Hb_006501_020 Hb_006501_020 Hb_000375_370--Hb_006501_020 Hb_000365_060 Hb_000365_060 Hb_000375_370--Hb_000365_060 Hb_001247_140--Hb_000365_060 Hb_001247_140--Hb_013753_010 Hb_001247_140--Hb_005122_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2053.54 3309.57 127.152 331.799 2150.3 3271.61
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
548.632 345.486 274.106 964.059 88.9292

CAGE analysis