Hb_031089_040

Information

Type -
Description -
Location Contig31089: 36720-45319
Sequence    

Annotation

kegg
ID rcu:RCOM_1058730
description Thioredoxin H-type, putative
nr
ID AEC03318.1
description thioredoxin H-type 1 [Hevea brasiliensis]
swissprot
ID P85801
description Thioredoxin H-type OS=Populus jackii PE=1 SV=1
trembl
ID I1SSI9
description Thioredoxin H-type 1 OS=Hevea brasiliensis GN=TrxH1 PE=2 SV=1
Gene Ontology
ID GO:0005737
description thioredoxin h-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32926: 36709-44671 , PASA_asmbl_32927: 36707-45283 , PASA_asmbl_32928: 43376-43749 , PASA_asmbl_32929: 37443-37711
cDNA
(Sanger)
(ID:Location)		 042_L19.ab1: 36707-45198

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031089_040 0.0 - - thioredoxin H-type 1 [Hevea brasiliensis]
2 Hb_002207_110 0.0775059693 - - -
3 Hb_066768_010 0.0807336694 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_004784_020 0.0812897657 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
5 Hb_002296_040 0.0829169129 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
6 Hb_004502_020 0.0839926842 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
7 Hb_000003_730 0.0866118461 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
8 Hb_010180_010 0.08930391 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
9 Hb_000326_090 0.0896498076 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
10 Hb_000083_170 0.0898697114 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
11 Hb_005867_020 0.0903413268 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
12 Hb_004306_020 0.0924964467 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
13 Hb_078185_010 0.0943121052 - - -
14 Hb_005278_020 0.0955938192 - - PREDICTED: sorcin-like [Jatropha curcas]
15 Hb_001998_230 0.098550163 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
16 Hb_003536_110 0.0986209304 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
17 Hb_000152_550 0.1002688308 - - PREDICTED: UMP-CMP kinase [Vitis vinifera]
18 Hb_005667_040 0.1022052013 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
19 Hb_000155_180 0.1028638353 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
20 Hb_010180_020 0.1030972669 - - hypothetical protein glysoja_030394 [Glycine soja]

Gene co-expression network

sample Hb_031089_040 Hb_031089_040 Hb_002207_110 Hb_002207_110 Hb_031089_040--Hb_002207_110 Hb_066768_010 Hb_066768_010 Hb_031089_040--Hb_066768_010 Hb_004784_020 Hb_004784_020 Hb_031089_040--Hb_004784_020 Hb_002296_040 Hb_002296_040 Hb_031089_040--Hb_002296_040 Hb_004502_020 Hb_004502_020 Hb_031089_040--Hb_004502_020 Hb_000003_730 Hb_000003_730 Hb_031089_040--Hb_000003_730 Hb_012799_160 Hb_012799_160 Hb_002207_110--Hb_012799_160 Hb_004032_010 Hb_004032_010 Hb_002207_110--Hb_004032_010 Hb_004306_020 Hb_004306_020 Hb_002207_110--Hb_004306_020 Hb_000152_550 Hb_000152_550 Hb_002207_110--Hb_000152_550 Hb_012022_120 Hb_012022_120 Hb_002207_110--Hb_012022_120 Hb_066768_010--Hb_004784_020 Hb_001250_060 Hb_001250_060 Hb_066768_010--Hb_001250_060 Hb_000326_090 Hb_000326_090 Hb_066768_010--Hb_000326_090 Hb_000083_170 Hb_000083_170 Hb_066768_010--Hb_000083_170 Hb_005867_020 Hb_005867_020 Hb_066768_010--Hb_005867_020 Hb_078185_010 Hb_078185_010 Hb_004784_020--Hb_078185_010 Hb_001047_240 Hb_001047_240 Hb_004784_020--Hb_001047_240 Hb_005278_020 Hb_005278_020 Hb_004784_020--Hb_005278_020 Hb_019762_020 Hb_019762_020 Hb_004784_020--Hb_019762_020 Hb_002596_040 Hb_002596_040 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_002296_040--Hb_000326_090 Hb_000707_030 Hb_000707_030 Hb_002296_040--Hb_000707_030 Hb_007735_030 Hb_007735_030 Hb_002296_040--Hb_007735_030 Hb_000505_140 Hb_000505_140 Hb_004502_020--Hb_000505_140 Hb_000155_180 Hb_000155_180 Hb_004502_020--Hb_000155_180 Hb_004502_020--Hb_000003_730 Hb_004502_020--Hb_002207_110 Hb_032202_090 Hb_032202_090 Hb_004502_020--Hb_032202_090 Hb_007441_270 Hb_007441_270 Hb_000003_730--Hb_007441_270 Hb_004032_100 Hb_004032_100 Hb_000003_730--Hb_004032_100 Hb_000684_230 Hb_000684_230 Hb_000003_730--Hb_000684_230 Hb_000003_730--Hb_002296_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.5684 13.417 22.9856 62.8755 35.4136 87.7803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.8286 87.2886 41.9542 20.9865 23.0583

CAGE analysis