Hb_031194_020

Information

Type -
Description -
Location Contig31194: 843-2286
Sequence    

Annotation

kegg
ID mtr:MTR_1g088510
description NAD(P)H-quinone oxidoreductase subunit 2 A
nr
ID CDY45544.1
description BnaCnng13030D [Brassica napus]
swissprot
ID Q1GTL2
description NADH-quinone oxidoreductase subunit N OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=nuoN PE=3 SV=1
trembl
ID A0A078E236
description BnaC09g16580D protein OS=Brassica napus GN=BnaC09g16580D PE=4 SV=1
Gene Ontology
ID GO:0005840
description nadh-plastoquinone oxidoreductase subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32980: 2513-3049
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031194_020 0.0 - - BnaCnng13030D [Brassica napus]
2 Hb_000645_270 0.0460459502 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
3 Hb_003622_050 0.0653711603 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
4 Hb_052139_010 0.0704968883 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
5 Hb_000000_090 0.0842962867 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007101_090 0.0936071029 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
7 Hb_000844_060 0.095858725 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
8 Hb_001856_290 0.0980415384 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
9 Hb_003947_020 0.1012493256 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
10 Hb_183479_030 0.1029421562 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
11 Hb_001053_050 0.104808431 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
12 Hb_009095_020 0.1086921396 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
13 Hb_026188_010 0.1101541299 - - PREDICTED: tropinone reductase homolog [Jatropha curcas]
14 Hb_001999_330 0.1117159857 - - hypothetical protein PRUPE_ppa022262mg, partial [Prunus persica]
15 Hb_043327_010 0.1120913126 - - PREDICTED: uncharacterized protein LOC105785093, partial [Gossypium raimondii]
16 Hb_005171_020 0.1130249359 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
17 Hb_000504_220 0.1154082238 - - hypothetical protein JCGZ_10249 [Jatropha curcas]
18 Hb_006272_010 0.1166944786 - - PREDICTED: cytochrome P450 86B1 [Vitis vinifera]
19 Hb_002600_110 0.1180595026 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
20 Hb_001080_290 0.1184288824 - - PSI reaction center subunit II [Citrus sinensis]

Gene co-expression network

sample Hb_031194_020 Hb_031194_020 Hb_000645_270 Hb_000645_270 Hb_031194_020--Hb_000645_270 Hb_003622_050 Hb_003622_050 Hb_031194_020--Hb_003622_050 Hb_052139_010 Hb_052139_010 Hb_031194_020--Hb_052139_010 Hb_000000_090 Hb_000000_090 Hb_031194_020--Hb_000000_090 Hb_007101_090 Hb_007101_090 Hb_031194_020--Hb_007101_090 Hb_000844_060 Hb_000844_060 Hb_031194_020--Hb_000844_060 Hb_000645_270--Hb_003622_050 Hb_000645_270--Hb_007101_090 Hb_003947_020 Hb_003947_020 Hb_000645_270--Hb_003947_020 Hb_000645_270--Hb_052139_010 Hb_009095_020 Hb_009095_020 Hb_000645_270--Hb_009095_020 Hb_003622_050--Hb_000844_060 Hb_001080_290 Hb_001080_290 Hb_003622_050--Hb_001080_290 Hb_002600_110 Hb_002600_110 Hb_003622_050--Hb_002600_110 Hb_002188_150 Hb_002188_150 Hb_003622_050--Hb_002188_150 Hb_001856_290 Hb_001856_290 Hb_052139_010--Hb_001856_290 Hb_052139_010--Hb_007101_090 Hb_001001_130 Hb_001001_130 Hb_052139_010--Hb_001001_130 Hb_052139_010--Hb_000000_090 Hb_000000_090--Hb_000645_270 Hb_000270_040 Hb_000270_040 Hb_000000_090--Hb_000270_040 Hb_000000_090--Hb_007101_090 Hb_000000_090--Hb_003622_050 Hb_007101_090--Hb_001001_130 Hb_007101_090--Hb_001856_290 Hb_001999_330 Hb_001999_330 Hb_007101_090--Hb_001999_330 Hb_002010_010 Hb_002010_010 Hb_007101_090--Hb_002010_010 Hb_003253_030 Hb_003253_030 Hb_000844_060--Hb_003253_030 Hb_000844_060--Hb_000645_270 Hb_000844_060--Hb_001999_330 Hb_000844_060--Hb_002600_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.132305 0.208225 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0498175 1.70256

CAGE analysis