Hb_031284_030

Information

Type -
Description -
Location Contig31284: 88777-107505
Sequence    

Annotation

kegg
ID rcu:RCOM_0443980
description hypothetical protein
nr
ID XP_002533230.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SUH5
description QWRF motif-containing protein 8 OS=Arabidopsis thaliana GN=QWRF8 PE=2 SV=1
trembl
ID B9T4R1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0443980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33117: 89201-107655 , PASA_asmbl_33118: 89212-107340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031284_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006351_020 0.1151132466 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
3 Hb_000023_110 0.1237744346 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
4 Hb_001450_040 0.1270901238 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
5 Hb_000152_190 0.1317232783 - - PREDICTED: K(+) efflux antiporter 5 [Jatropha curcas]
6 Hb_006889_030 0.1385499444 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
7 Hb_000327_360 0.1406219231 - - unnamed protein product [Coffea canephora]
8 Hb_012807_150 0.152452172 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
9 Hb_000049_270 0.1526673663 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
10 Hb_003680_030 0.1540167718 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
11 Hb_001366_170 0.1555561326 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
12 Hb_004223_140 0.1556766399 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
13 Hb_004032_210 0.1576238756 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001119_070 0.1577469553 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
15 Hb_000098_170 0.1611185824 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
16 Hb_005074_040 0.1646353063 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000540_160 0.1652488264 - - PREDICTED: mitogen-activated protein kinase homolog NTF6 [Jatropha curcas]
18 Hb_004730_020 0.1669949689 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
19 Hb_000527_080 0.1670039717 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
20 Hb_019654_060 0.1671168104 - - PREDICTED: rop guanine nucleotide exchange factor 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_031284_030 Hb_031284_030 Hb_006351_020 Hb_006351_020 Hb_031284_030--Hb_006351_020 Hb_000023_110 Hb_000023_110 Hb_031284_030--Hb_000023_110 Hb_001450_040 Hb_001450_040 Hb_031284_030--Hb_001450_040 Hb_000152_190 Hb_000152_190 Hb_031284_030--Hb_000152_190 Hb_006889_030 Hb_006889_030 Hb_031284_030--Hb_006889_030 Hb_000327_360 Hb_000327_360 Hb_031284_030--Hb_000327_360 Hb_001119_070 Hb_001119_070 Hb_006351_020--Hb_001119_070 Hb_001545_130 Hb_001545_130 Hb_006351_020--Hb_001545_130 Hb_003929_180 Hb_003929_180 Hb_006351_020--Hb_003929_180 Hb_004223_140 Hb_004223_140 Hb_006351_020--Hb_004223_140 Hb_004032_210 Hb_004032_210 Hb_006351_020--Hb_004032_210 Hb_006351_020--Hb_000152_190 Hb_000049_270 Hb_000049_270 Hb_000023_110--Hb_000049_270 Hb_003408_010 Hb_003408_010 Hb_000023_110--Hb_003408_010 Hb_000023_110--Hb_000327_360 Hb_012807_150 Hb_012807_150 Hb_000023_110--Hb_012807_150 Hb_003606_050 Hb_003606_050 Hb_000023_110--Hb_003606_050 Hb_000932_050 Hb_000932_050 Hb_001450_040--Hb_000932_050 Hb_000527_080 Hb_000527_080 Hb_001450_040--Hb_000527_080 Hb_001450_040--Hb_003408_010 Hb_001450_040--Hb_000023_110 Hb_001450_040--Hb_012807_150 Hb_003540_080 Hb_003540_080 Hb_000152_190--Hb_003540_080 Hb_000258_220 Hb_000258_220 Hb_000152_190--Hb_000258_220 Hb_000152_190--Hb_004223_140 Hb_000152_190--Hb_003929_180 Hb_164010_050 Hb_164010_050 Hb_000152_190--Hb_164010_050 Hb_006889_030--Hb_001119_070 Hb_001459_090 Hb_001459_090 Hb_006889_030--Hb_001459_090 Hb_000098_170 Hb_000098_170 Hb_006889_030--Hb_000098_170 Hb_006889_030--Hb_000049_270 Hb_000236_180 Hb_000236_180 Hb_006889_030--Hb_000236_180 Hb_000327_360--Hb_012807_150 Hb_007101_260 Hb_007101_260 Hb_000327_360--Hb_007101_260 Hb_005074_040 Hb_005074_040 Hb_000327_360--Hb_005074_040 Hb_006120_060 Hb_006120_060 Hb_000327_360--Hb_006120_060 Hb_000283_140 Hb_000283_140 Hb_000327_360--Hb_000283_140 Hb_000808_150 Hb_000808_150 Hb_000327_360--Hb_000808_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.544983 1.28749 7.54903 13.2943 0.944613 1.82114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.281864 0.322573 1.98151 2.84269 4.45773

CAGE analysis