Hb_031284_040

Information

Type -
Description -
Location Contig31284: 109507-111843
Sequence    

Annotation

kegg
ID tcc:TCM_046928
description Pentatricopeptide repeat (PPR) superfamily protein
nr
ID XP_012071535.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
swissprot
ID Q9SUH6
description Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
trembl
ID A0A067L2L9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04058 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at4g30700

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33119: 109703-109858
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031284_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Jatropha curcas]
2 Hb_000083_160 0.0555538722 - - Cell division cycle protein, putative [Ricinus communis]
3 Hb_000173_490 0.0612399313 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
4 Hb_007575_050 0.0647584426 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE6 [Jatropha curcas]
5 Hb_004935_030 0.0667052777 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
6 Hb_000271_090 0.0691888393 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_008159_020 0.0718776112 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
8 Hb_001638_170 0.0723655676 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
9 Hb_004954_070 0.0740782463 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
10 Hb_000030_190 0.075614987 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
11 Hb_000613_050 0.0776613686 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
12 Hb_007576_110 0.0776797504 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
13 Hb_000820_170 0.0786037592 - - PREDICTED: THO complex subunit 4A [Jatropha curcas]
14 Hb_001635_090 0.0786079809 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
15 Hb_000225_040 0.0789493139 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
16 Hb_006252_040 0.0794397206 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
17 Hb_005291_030 0.0797342462 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
18 Hb_003362_070 0.0798641282 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
19 Hb_000656_380 0.0800812849 - - PREDICTED: exportin-T [Jatropha curcas]
20 Hb_000084_120 0.0802543738 - - PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Jatropha curcas]

Gene co-expression network

sample Hb_031284_040 Hb_031284_040 Hb_000083_160 Hb_000083_160 Hb_031284_040--Hb_000083_160 Hb_000173_490 Hb_000173_490 Hb_031284_040--Hb_000173_490 Hb_007575_050 Hb_007575_050 Hb_031284_040--Hb_007575_050 Hb_004935_030 Hb_004935_030 Hb_031284_040--Hb_004935_030 Hb_000271_090 Hb_000271_090 Hb_031284_040--Hb_000271_090 Hb_008159_020 Hb_008159_020 Hb_031284_040--Hb_008159_020 Hb_000083_160--Hb_004935_030 Hb_000083_160--Hb_000271_090 Hb_001617_060 Hb_001617_060 Hb_000083_160--Hb_001617_060 Hb_001635_090 Hb_001635_090 Hb_000083_160--Hb_001635_090 Hb_002235_170 Hb_002235_170 Hb_000083_160--Hb_002235_170 Hb_001409_020 Hb_001409_020 Hb_000173_490--Hb_001409_020 Hb_000030_190 Hb_000030_190 Hb_000173_490--Hb_000030_190 Hb_010618_010 Hb_010618_010 Hb_000173_490--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000173_490--Hb_001248_060 Hb_000173_490--Hb_001635_090 Hb_003878_070 Hb_003878_070 Hb_007575_050--Hb_003878_070 Hb_000225_040 Hb_000225_040 Hb_007575_050--Hb_000225_040 Hb_004954_070 Hb_004954_070 Hb_007575_050--Hb_004954_070 Hb_003025_110 Hb_003025_110 Hb_007575_050--Hb_003025_110 Hb_002518_280 Hb_002518_280 Hb_007575_050--Hb_002518_280 Hb_004412_010 Hb_004412_010 Hb_007575_050--Hb_004412_010 Hb_003362_070 Hb_003362_070 Hb_004935_030--Hb_003362_070 Hb_003371_110 Hb_003371_110 Hb_004935_030--Hb_003371_110 Hb_000457_260 Hb_000457_260 Hb_004935_030--Hb_000457_260 Hb_004935_030--Hb_001617_060 Hb_007576_110 Hb_007576_110 Hb_004935_030--Hb_007576_110 Hb_006157_020 Hb_006157_020 Hb_000271_090--Hb_006157_020 Hb_004429_100 Hb_004429_100 Hb_000271_090--Hb_004429_100 Hb_000084_120 Hb_000084_120 Hb_000271_090--Hb_000084_120 Hb_033834_060 Hb_033834_060 Hb_000271_090--Hb_033834_060 Hb_004235_080 Hb_004235_080 Hb_008159_020--Hb_004235_080 Hb_000179_030 Hb_000179_030 Hb_008159_020--Hb_000179_030 Hb_000768_110 Hb_000768_110 Hb_008159_020--Hb_000768_110 Hb_006252_040 Hb_006252_040 Hb_008159_020--Hb_006252_040 Hb_002823_030 Hb_002823_030 Hb_008159_020--Hb_002823_030 Hb_005914_060 Hb_005914_060 Hb_008159_020--Hb_005914_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24183 1.52375 0.966748 1.17541 1.47066 2.73613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.44508 1.45129 1.19621 1.7001 1.01608

CAGE analysis