Hb_031284_060

Information

Type -
Description -
Location Contig31284: 117204-124387
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11290g
description POPTRDRAFT_578717; cellulose synthase family protein
nr
ID XP_012071537.1
description PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
swissprot
ID Q9SWW6
description Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1
trembl
ID A0A067Y8E0
description Cellulose synthase OS=Populus tomentosa GN=CesA7 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33123: 117191-124295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031284_060 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
2 Hb_000193_320 0.0728179018 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000328_030 0.0828980225 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
4 Hb_001712_030 0.0843093683 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
5 Hb_005523_030 0.0843730408 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
6 Hb_002078_180 0.0844297427 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
7 Hb_000086_490 0.0845624438 - - cellulose synthase [Populus tomentosa]
8 Hb_000173_240 0.0864877812 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002739_140 0.0899714117 - - PREDICTED: protein TPX2 [Jatropha curcas]
10 Hb_038927_020 0.0908767685 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
11 Hb_015807_090 0.0921431284 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
12 Hb_000776_090 0.092973551 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
13 Hb_000311_100 0.0932553994 - - conserved hypothetical protein [Ricinus communis]
14 Hb_158092_050 0.0948172926 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
15 Hb_000165_260 0.0953208377 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
16 Hb_001935_060 0.0971009013 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
17 Hb_005686_040 0.0986515203 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002311_010 0.099654648 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
19 Hb_042083_010 0.09981964 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
20 Hb_001377_230 0.1008659821 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]

Gene co-expression network

sample Hb_031284_060 Hb_031284_060 Hb_000193_320 Hb_000193_320 Hb_031284_060--Hb_000193_320 Hb_000328_030 Hb_000328_030 Hb_031284_060--Hb_000328_030 Hb_001712_030 Hb_001712_030 Hb_031284_060--Hb_001712_030 Hb_005523_030 Hb_005523_030 Hb_031284_060--Hb_005523_030 Hb_002078_180 Hb_002078_180 Hb_031284_060--Hb_002078_180 Hb_000086_490 Hb_000086_490 Hb_031284_060--Hb_000086_490 Hb_000193_320--Hb_002078_180 Hb_001500_090 Hb_001500_090 Hb_000193_320--Hb_001500_090 Hb_000776_090 Hb_000776_090 Hb_000193_320--Hb_000776_090 Hb_009476_080 Hb_009476_080 Hb_000193_320--Hb_009476_080 Hb_000193_320--Hb_000086_490 Hb_015807_090 Hb_015807_090 Hb_000193_320--Hb_015807_090 Hb_000328_030--Hb_000086_490 Hb_001377_230 Hb_001377_230 Hb_000328_030--Hb_001377_230 Hb_000165_260 Hb_000165_260 Hb_000328_030--Hb_000165_260 Hb_042083_010 Hb_042083_010 Hb_000328_030--Hb_042083_010 Hb_000328_030--Hb_005523_030 Hb_000328_030--Hb_015807_090 Hb_000462_040 Hb_000462_040 Hb_001712_030--Hb_000462_040 Hb_038927_020 Hb_038927_020 Hb_001712_030--Hb_038927_020 Hb_002311_010 Hb_002311_010 Hb_001712_030--Hb_002311_010 Hb_007281_010 Hb_007281_010 Hb_001712_030--Hb_007281_010 Hb_000311_100 Hb_000311_100 Hb_001712_030--Hb_000311_100 Hb_001712_030--Hb_000165_260 Hb_005523_030--Hb_000086_490 Hb_005523_030--Hb_015807_090 Hb_001051_060 Hb_001051_060 Hb_005523_030--Hb_001051_060 Hb_005686_040 Hb_005686_040 Hb_005523_030--Hb_005686_040 Hb_005523_030--Hb_000776_090 Hb_005523_030--Hb_002078_180 Hb_002078_180--Hb_005686_040 Hb_002835_360 Hb_002835_360 Hb_002078_180--Hb_002835_360 Hb_002078_180--Hb_015807_090 Hb_002078_180--Hb_000086_490 Hb_002078_180--Hb_009476_080 Hb_001935_060 Hb_001935_060 Hb_002078_180--Hb_001935_060 Hb_000086_490--Hb_015807_090 Hb_000086_490--Hb_005686_040 Hb_000086_490--Hb_001051_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2204 12.6739 7.96884 180.524 0.677931 1.0117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.967899 0.751662 0.614674 1.09638 142.97

CAGE analysis