Hb_031321_020

Information

Type -
Description -
Location Contig31321: 44609-46433
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15520g
description POPTRDRAFT_711860; hypothetical protein
nr
ID XP_002303720.2
description hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
swissprot
ID Q7VG78
description Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
trembl
ID B9GYH6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15520g PE=4 SV=2
Gene Ontology
ID GO:0008725
description glutamine amidotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33174: 43970-46394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031321_020 0.0 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
2 Hb_007221_020 0.0376662669 - - FAD-binding domain-containing family protein [Populus trichocarpa]
3 Hb_031022_030 0.055268059 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
4 Hb_001021_120 0.0577439504 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
5 Hb_007922_030 0.0646283452 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
6 Hb_000134_130 0.0729625438 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
7 Hb_000331_170 0.073359001 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
8 Hb_019516_010 0.0766615076 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
9 Hb_017434_010 0.078131959 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
10 Hb_000058_180 0.0805050445 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
11 Hb_152910_050 0.0810671466 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
12 Hb_000009_270 0.0817196119 - - Calmodulin, putative [Ricinus communis]
13 Hb_132840_190 0.0843281638 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
14 Hb_004453_160 0.0869346412 - - conserved hypothetical protein [Ricinus communis]
15 Hb_098315_060 0.0882891498 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
16 Hb_004007_050 0.0895767895 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
17 Hb_000103_220 0.0912244349 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
18 Hb_005276_140 0.0945041526 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009486_050 0.0955143771 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
20 Hb_000003_380 0.096419078 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_031321_020 Hb_031321_020 Hb_007221_020 Hb_007221_020 Hb_031321_020--Hb_007221_020 Hb_031022_030 Hb_031022_030 Hb_031321_020--Hb_031022_030 Hb_001021_120 Hb_001021_120 Hb_031321_020--Hb_001021_120 Hb_007922_030 Hb_007922_030 Hb_031321_020--Hb_007922_030 Hb_000134_130 Hb_000134_130 Hb_031321_020--Hb_000134_130 Hb_000331_170 Hb_000331_170 Hb_031321_020--Hb_000331_170 Hb_007221_020--Hb_007922_030 Hb_007221_020--Hb_031022_030 Hb_132840_190 Hb_132840_190 Hb_007221_020--Hb_132840_190 Hb_004453_160 Hb_004453_160 Hb_007221_020--Hb_004453_160 Hb_019516_010 Hb_019516_010 Hb_007221_020--Hb_019516_010 Hb_031022_030--Hb_001021_120 Hb_024071_030 Hb_024071_030 Hb_031022_030--Hb_024071_030 Hb_031022_030--Hb_007922_030 Hb_000556_060 Hb_000556_060 Hb_031022_030--Hb_000556_060 Hb_000009_270 Hb_000009_270 Hb_001021_120--Hb_000009_270 Hb_001021_120--Hb_000134_130 Hb_001021_120--Hb_007922_030 Hb_152910_050 Hb_152910_050 Hb_001021_120--Hb_152910_050 Hb_098315_060 Hb_098315_060 Hb_001021_120--Hb_098315_060 Hb_008021_060 Hb_008021_060 Hb_007922_030--Hb_008021_060 Hb_001652_100 Hb_001652_100 Hb_007922_030--Hb_001652_100 Hb_000058_180 Hb_000058_180 Hb_007922_030--Hb_000058_180 Hb_000134_130--Hb_152910_050 Hb_000134_130--Hb_098315_060 Hb_040852_010 Hb_040852_010 Hb_000134_130--Hb_040852_010 Hb_003894_110 Hb_003894_110 Hb_000134_130--Hb_003894_110 Hb_003376_020 Hb_003376_020 Hb_000134_130--Hb_003376_020 Hb_000031_240 Hb_000031_240 Hb_000331_170--Hb_000031_240 Hb_000331_170--Hb_007221_020 Hb_005276_140 Hb_005276_140 Hb_000331_170--Hb_005276_140 Hb_000331_170--Hb_019516_010 Hb_000331_170--Hb_004453_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.719787 16.0513 13.2779 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0498256 8.05681

CAGE analysis