Hb_031330_010

Information

Type -
Description -
Location Contig31330: 518-1412
Sequence    

Annotation

kegg
ID rcu:RCOM_0819440
description beta-1,3-glucuronyltransferase, putative (EC:2.4.1.135)
nr
ID XP_002525174.1
description beta-1,3-glucuronyltransferase, putative [Ricinus communis]
swissprot
ID Q9ZQC6
description Probable beta-1,4-xylosyltransferase IRX9 OS=Arabidopsis thaliana GN=IRX9 PE=2 SV=1
trembl
ID B9SGQ5
description Beta-1,3-glucuronyltransferase, putative OS=Ricinus communis GN=RCOM_0819440 PE=4 SV=1
Gene Ontology
ID GO:0000139
description probable beta- -xylosyltransferase irx9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031330_010 0.0 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
2 Hb_000645_230 0.0521415338 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
3 Hb_000483_340 0.0564855711 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004884_040 0.0641329066 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
5 Hb_000684_190 0.0699528614 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
6 Hb_071079_040 0.0699612987 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
7 Hb_001856_250 0.0725633519 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
8 Hb_002734_020 0.072999647 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
9 Hb_002785_020 0.0747992911 - - PREDICTED: laccase-4-like [Jatropha curcas]
10 Hb_000608_090 0.0794215625 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000729_040 0.0800710043 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
12 Hb_009079_010 0.0804734623 - - JHL18I08.8 [Jatropha curcas]
13 Hb_005616_020 0.0812176914 - - kinase, putative [Ricinus communis]
14 Hb_000497_030 0.0828170608 - - -
15 Hb_000422_090 0.0852429264 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000462_120 0.0855866202 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
17 Hb_000362_030 0.0857057774 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
18 Hb_003580_020 0.0894844442 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000318_500 0.0897051603 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000997_220 0.090039641 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA14-like [Jatropha curcas]

Gene co-expression network

sample Hb_031330_010 Hb_031330_010 Hb_000645_230 Hb_000645_230 Hb_031330_010--Hb_000645_230 Hb_000483_340 Hb_000483_340 Hb_031330_010--Hb_000483_340 Hb_004884_040 Hb_004884_040 Hb_031330_010--Hb_004884_040 Hb_000684_190 Hb_000684_190 Hb_031330_010--Hb_000684_190 Hb_071079_040 Hb_071079_040 Hb_031330_010--Hb_071079_040 Hb_001856_250 Hb_001856_250 Hb_031330_010--Hb_001856_250 Hb_000645_230--Hb_000684_190 Hb_002785_020 Hb_002785_020 Hb_000645_230--Hb_002785_020 Hb_000645_230--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000645_230--Hb_002734_020 Hb_000645_230--Hb_000483_340 Hb_000483_340--Hb_001856_250 Hb_000483_340--Hb_004884_040 Hb_000483_340--Hb_002734_020 Hb_000997_220 Hb_000997_220 Hb_000483_340--Hb_000997_220 Hb_004884_040--Hb_002734_020 Hb_004884_040--Hb_001856_250 Hb_000318_500 Hb_000318_500 Hb_004884_040--Hb_000318_500 Hb_000684_190--Hb_002785_020 Hb_001935_200 Hb_001935_200 Hb_000684_190--Hb_001935_200 Hb_000422_090 Hb_000422_090 Hb_000684_190--Hb_000422_090 Hb_000684_190--Hb_004884_040 Hb_000684_190--Hb_002734_020 Hb_000497_030 Hb_000497_030 Hb_071079_040--Hb_000497_030 Hb_000699_220 Hb_000699_220 Hb_071079_040--Hb_000699_220 Hb_000339_060 Hb_000339_060 Hb_071079_040--Hb_000339_060 Hb_071079_040--Hb_000645_230 Hb_006717_060 Hb_006717_060 Hb_071079_040--Hb_006717_060 Hb_001856_250--Hb_002734_020 Hb_027577_010 Hb_027577_010 Hb_001856_250--Hb_027577_010 Hb_006651_020 Hb_006651_020 Hb_001856_250--Hb_006651_020 Hb_000729_040 Hb_000729_040 Hb_001856_250--Hb_000729_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.67605 10.5958 196.008 0.183444 0.486564
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.445424 0.174958 0 0.607153 47.9131

CAGE analysis