Hb_031340_030

Information

Type -
Description -
Location Contig31340: 11739-13094
Sequence    

Annotation

kegg
ID rcu:RCOM_0373000
description kinase, putative (EC:2.7.10.2)
nr
ID XP_012074981.1
description PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
swissprot
ID Q9M345
description L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana GN=LECRK42 PE=2 SV=1
trembl
ID A0A067KHG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09109 PE=3 SV=1
Gene Ontology
ID GO:0004674
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031340_030 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
2 Hb_005064_040 0.0778694036 - - hypothetical protein POPTR_0008s02680g [Populus trichocarpa]
3 Hb_000497_120 0.0829766996 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000081_020 0.0902729532 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
5 Hb_000539_080 0.0952770898 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
6 Hb_000140_260 0.1018183609 - - PREDICTED: uncharacterized protein LOC105642920 [Jatropha curcas]
7 Hb_002999_090 0.1099085717 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000948_070 0.1107727664 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
9 Hb_001901_010 0.1149031594 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
10 Hb_003462_150 0.1159739826 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
11 Hb_004544_080 0.116942933 - - lectin protein kinase [Populus trichocarpa]
12 Hb_002475_020 0.1199927913 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
13 Hb_000141_230 0.1200325484 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
14 Hb_027141_010 0.1227707505 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_002556_020 0.1244835791 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
16 Hb_002081_040 0.1251698034 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
17 Hb_000205_210 0.125202444 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
18 Hb_076895_020 0.1258625599 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
19 Hb_005228_170 0.1275993702 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
20 Hb_000984_080 0.1303395871 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]

Gene co-expression network

sample Hb_031340_030 Hb_031340_030 Hb_005064_040 Hb_005064_040 Hb_031340_030--Hb_005064_040 Hb_000497_120 Hb_000497_120 Hb_031340_030--Hb_000497_120 Hb_000081_020 Hb_000081_020 Hb_031340_030--Hb_000081_020 Hb_000539_080 Hb_000539_080 Hb_031340_030--Hb_000539_080 Hb_000140_260 Hb_000140_260 Hb_031340_030--Hb_000140_260 Hb_002999_090 Hb_002999_090 Hb_031340_030--Hb_002999_090 Hb_005064_040--Hb_000081_020 Hb_005064_040--Hb_000497_120 Hb_005064_040--Hb_000539_080 Hb_159015_010 Hb_159015_010 Hb_005064_040--Hb_159015_010 Hb_005064_040--Hb_000140_260 Hb_027141_010 Hb_027141_010 Hb_000497_120--Hb_027141_010 Hb_000497_120--Hb_159015_010 Hb_000497_120--Hb_000140_260 Hb_000205_210 Hb_000205_210 Hb_000497_120--Hb_000205_210 Hb_000081_020--Hb_000539_080 Hb_076895_020 Hb_076895_020 Hb_000081_020--Hb_076895_020 Hb_000238_060 Hb_000238_060 Hb_000081_020--Hb_000238_060 Hb_005228_170 Hb_005228_170 Hb_000081_020--Hb_005228_170 Hb_000539_080--Hb_076895_020 Hb_000948_070 Hb_000948_070 Hb_000539_080--Hb_000948_070 Hb_002110_270 Hb_002110_270 Hb_000539_080--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_000539_080--Hb_006006_070 Hb_000539_080--Hb_027141_010 Hb_004200_040 Hb_004200_040 Hb_000140_260--Hb_004200_040 Hb_000140_260--Hb_000205_210 Hb_000140_260--Hb_027141_010 Hb_000140_260--Hb_076895_020 Hb_000140_260--Hb_000539_080 Hb_000984_080 Hb_000984_080 Hb_000140_260--Hb_000984_080 Hb_003462_150 Hb_003462_150 Hb_002999_090--Hb_003462_150 Hb_002556_020 Hb_002556_020 Hb_002999_090--Hb_002556_020 Hb_004544_080 Hb_004544_080 Hb_002999_090--Hb_004544_080 Hb_000141_230 Hb_000141_230 Hb_002999_090--Hb_000141_230 Hb_001901_010 Hb_001901_010 Hb_002999_090--Hb_001901_010 Hb_002475_020 Hb_002475_020 Hb_002999_090--Hb_002475_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.15719 0.0229425 2.02049 0 0.0135121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0516783 11.4165 0.287612

CAGE analysis