Hb_031340_050

Information

Type -
Description -
Location Contig31340: 20921-22417
Sequence    

Annotation

kegg
ID rcu:RCOM_0233850
description tropinone reductase, putative (EC:1.1.1.206)
nr
ID XP_012074982.1
description PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9LHT0
description Tropinone reductase homolog At5g06060 OS=Arabidopsis thaliana GN=At5g06060 PE=2 SV=1
trembl
ID B9T429
description Tropinone reductase, putative OS=Ricinus communis GN=RCOM_0233850 PE=3 SV=1
Gene Ontology
ID GO:0050356
description tropinone reductase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33182: 21034-22377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031340_050 0.0 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
2 Hb_000137_090 0.0699997896 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
3 Hb_001357_250 0.0715909057 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
4 Hb_002197_050 0.0746653384 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
5 Hb_001579_220 0.0759464576 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
6 Hb_000252_170 0.0811704382 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
7 Hb_023732_030 0.0812124648 - - PREDICTED: proteinaceous RNase P 2-like isoform X2 [Jatropha curcas]
8 Hb_000907_110 0.0834042991 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
9 Hb_002000_080 0.0841493497 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
10 Hb_000031_120 0.0843815333 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
11 Hb_000146_070 0.0872241386 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
12 Hb_001545_080 0.0876931464 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
13 Hb_000015_040 0.0889838054 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
14 Hb_011671_180 0.0890526772 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
15 Hb_004410_030 0.0893212728 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_000028_590 0.0906022529 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
17 Hb_002481_080 0.0923337003 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
18 Hb_002044_150 0.0924903422 - - PREDICTED: A/G-specific adenine DNA glycosylase isoform X1 [Jatropha curcas]
19 Hb_004254_090 0.0929226988 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
20 Hb_033642_090 0.0934417355 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_031340_050 Hb_031340_050 Hb_000137_090 Hb_000137_090 Hb_031340_050--Hb_000137_090 Hb_001357_250 Hb_001357_250 Hb_031340_050--Hb_001357_250 Hb_002197_050 Hb_002197_050 Hb_031340_050--Hb_002197_050 Hb_001579_220 Hb_001579_220 Hb_031340_050--Hb_001579_220 Hb_000252_170 Hb_000252_170 Hb_031340_050--Hb_000252_170 Hb_023732_030 Hb_023732_030 Hb_031340_050--Hb_023732_030 Hb_000137_090--Hb_002197_050 Hb_000137_090--Hb_001357_250 Hb_000031_120 Hb_000031_120 Hb_000137_090--Hb_000031_120 Hb_000139_290 Hb_000139_290 Hb_000137_090--Hb_000139_290 Hb_001009_250 Hb_001009_250 Hb_000137_090--Hb_001009_250 Hb_033642_090 Hb_033642_090 Hb_001357_250--Hb_033642_090 Hb_004410_030 Hb_004410_030 Hb_001357_250--Hb_004410_030 Hb_000417_130 Hb_000417_130 Hb_001357_250--Hb_000417_130 Hb_123915_040 Hb_123915_040 Hb_001357_250--Hb_123915_040 Hb_000907_110 Hb_000907_110 Hb_001357_250--Hb_000907_110 Hb_063716_100 Hb_063716_100 Hb_001357_250--Hb_063716_100 Hb_000948_160 Hb_000948_160 Hb_002197_050--Hb_000948_160 Hb_000431_170 Hb_000431_170 Hb_002197_050--Hb_000431_170 Hb_000003_320 Hb_000003_320 Hb_002197_050--Hb_000003_320 Hb_000312_080 Hb_000312_080 Hb_002197_050--Hb_000312_080 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_003050_220 Hb_003050_220 Hb_001579_220--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_001579_220--Hb_000015_040 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_001579_220--Hb_000680_160 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050 Hb_000296_070 Hb_000296_070 Hb_000252_170--Hb_000296_070 Hb_000123_210 Hb_000123_210 Hb_000252_170--Hb_000123_210 Hb_000252_170--Hb_000907_110 Hb_000252_170--Hb_001357_250 Hb_000556_160 Hb_000556_160 Hb_000252_170--Hb_000556_160 Hb_003376_330 Hb_003376_330 Hb_023732_030--Hb_003376_330 Hb_073973_100 Hb_073973_100 Hb_023732_030--Hb_073973_100 Hb_000556_120 Hb_000556_120 Hb_023732_030--Hb_000556_120 Hb_023732_030--Hb_000907_110 Hb_023732_030--Hb_000431_170 Hb_023732_030--Hb_002197_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6644 10.6444 12.2555 11.0373 19.4396 17.4839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.8224 20.1513 19.7183 27.58 12.5353

CAGE analysis