Hb_031403_010

Information

Type -
Description -
Location Contig31403: 12926-13474
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40140g
description hypothetical protein
nr
ID XP_006370148.1
description hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
swissprot
ID Q9S7R3
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana GN=LSH10 PE=1 SV=1
trembl
ID B9N975
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s40140g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33188: 10907-13566
cDNA
(Sanger)
(ID:Location)		 012_C13.ab1: 11268-13566 , 029_P17.ab1: 12921-13566 , 034_A15.ab1: 11268-13566 , 043_P17.ab1: 11249-13501 , 044_F13.ab1: 11268-13566 , 049_L23.ab1: 11396-13566 , 052_H18.ab1: 11301-13566

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031403_010 0.0 - - hypothetical protein POPTR_0001s40140g [Populus trichocarpa]
2 Hb_003751_120 0.0901100171 - - -
3 Hb_000304_020 0.1038064031 - - beta-1,3-glucanase form RRII Gln 3 [Hevea brasiliensis]
4 Hb_001514_190 0.1266482272 - - -
5 Hb_005867_040 0.1276582539 transcription factor TF Family: RWP-RK PREDICTED: protein RKD4 [Jatropha curcas]
6 Hb_009026_050 0.1345243391 - - vacuolar ATPase F subunit [Hevea brasiliensis]
7 Hb_000809_040 0.1354278687 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
8 Hb_000567_200 0.1359438873 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
9 Hb_001518_020 0.136324662 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
10 Hb_005245_090 0.1373294005 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
11 Hb_001930_070 0.1386538299 - - -
12 Hb_002298_040 0.139216428 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
13 Hb_114684_020 0.1401264432 - - beta-1,3-glucanase [Hevea brasiliensis]
14 Hb_000193_230 0.1422758998 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
15 Hb_006499_010 0.1442204708 - - -
16 Hb_002849_210 0.146475742 - - protein binding protein, putative [Ricinus communis]
17 Hb_005214_110 0.147020653 - - -
18 Hb_001366_220 0.1485996592 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004882_020 0.148657499 - - -
20 Hb_006189_010 0.1502540627 - - -

Gene co-expression network

sample Hb_031403_010 Hb_031403_010 Hb_003751_120 Hb_003751_120 Hb_031403_010--Hb_003751_120 Hb_000304_020 Hb_000304_020 Hb_031403_010--Hb_000304_020 Hb_001514_190 Hb_001514_190 Hb_031403_010--Hb_001514_190 Hb_005867_040 Hb_005867_040 Hb_031403_010--Hb_005867_040 Hb_009026_050 Hb_009026_050 Hb_031403_010--Hb_009026_050 Hb_000809_040 Hb_000809_040 Hb_031403_010--Hb_000809_040 Hb_003751_120--Hb_000304_020 Hb_030765_020 Hb_030765_020 Hb_003751_120--Hb_030765_020 Hb_005618_040 Hb_005618_040 Hb_003751_120--Hb_005618_040 Hb_025087_010 Hb_025087_010 Hb_003751_120--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_003751_120--Hb_000085_300 Hb_000849_040 Hb_000849_040 Hb_000304_020--Hb_000849_040 Hb_114684_020 Hb_114684_020 Hb_000304_020--Hb_114684_020 Hb_001366_220 Hb_001366_220 Hb_000304_020--Hb_001366_220 Hb_006787_040 Hb_006787_040 Hb_000304_020--Hb_006787_040 Hb_005245_090 Hb_005245_090 Hb_000304_020--Hb_005245_090 Hb_000123_110 Hb_000123_110 Hb_001514_190--Hb_000123_110 Hb_001930_070 Hb_001930_070 Hb_001514_190--Hb_001930_070 Hb_006499_010 Hb_006499_010 Hb_001514_190--Hb_006499_010 Hb_007245_090 Hb_007245_090 Hb_001514_190--Hb_007245_090 Hb_000014_100 Hb_000014_100 Hb_001514_190--Hb_000014_100 Hb_000032_260 Hb_000032_260 Hb_005867_040--Hb_000032_260 Hb_005867_040--Hb_000085_300 Hb_005276_100 Hb_005276_100 Hb_005867_040--Hb_005276_100 Hb_000340_430 Hb_000340_430 Hb_005867_040--Hb_000340_430 Hb_005867_040--Hb_003751_120 Hb_000089_130 Hb_000089_130 Hb_009026_050--Hb_000089_130 Hb_009026_050--Hb_025087_010 Hb_001366_230 Hb_001366_230 Hb_009026_050--Hb_001366_230 Hb_000313_380 Hb_000313_380 Hb_009026_050--Hb_000313_380 Hb_002025_320 Hb_002025_320 Hb_009026_050--Hb_002025_320 Hb_183963_020 Hb_183963_020 Hb_009026_050--Hb_183963_020 Hb_000809_040--Hb_001366_220 Hb_000809_040--Hb_000313_380 Hb_001981_090 Hb_001981_090 Hb_000809_040--Hb_001981_090 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000085_310 Hb_000085_310 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
748.467 120.067 0 1.54644 658.897 669.637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
875.331 683.718 668.075 313.251 0

CAGE analysis