Hb_031527_020

Information

Type -
Description -
Location Contig31527: 9279-14688
Sequence    

Annotation

kegg
ID tcc:TCM_017709
description PRP38 family protein isoform 1
nr
ID XP_012086106.1
description PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
swissprot
ID Q80SY5
description Pre-mRNA-splicing factor 38B OS=Mus musculus GN=Prpf38b PE=1 SV=1
trembl
ID A0A067K178
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21048 PE=4 SV=1
Gene Ontology
ID GO:0000956
description pre-mrna-splicing factor 38b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33249: 8249-8721 , PASA_asmbl_33250: 9298-14761 , PASA_asmbl_33251: 9298-14761 , PASA_asmbl_33253: 12167-12247
cDNA
(Sanger)
(ID:Location)		 010_C06.ab1: 9298-13308

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031527_020 0.0 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
2 Hb_005489_080 0.041797449 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003785_040 0.0543951203 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
4 Hb_111198_010 0.0544318265 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
5 Hb_003609_030 0.0682487318 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
6 Hb_000732_120 0.0699597579 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
7 Hb_000336_250 0.0705967715 transcription factor TF Family: mTERF hypothetical protein B456_002G027700 [Gossypium raimondii]
8 Hb_008511_030 0.0707864252 - - guanine nucleotide-binding protein beta, putative [Ricinus communis]
9 Hb_000092_020 0.070845789 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
10 Hb_004055_150 0.0708902712 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000169_130 0.0717873729 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
12 Hb_002686_250 0.0718131992 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
13 Hb_001946_040 0.0719854765 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000261_220 0.0732056153 - - PREDICTED: TBC1 domain family member 13 [Jatropha curcas]
15 Hb_000502_050 0.0745799289 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
16 Hb_003052_140 0.0747075523 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
17 Hb_002783_310 0.0748491397 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
18 Hb_000140_080 0.075486953 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
19 Hb_000025_360 0.0760193634 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
20 Hb_045793_010 0.0764622469 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_031527_020 Hb_031527_020 Hb_005489_080 Hb_005489_080 Hb_031527_020--Hb_005489_080 Hb_003785_040 Hb_003785_040 Hb_031527_020--Hb_003785_040 Hb_111198_010 Hb_111198_010 Hb_031527_020--Hb_111198_010 Hb_003609_030 Hb_003609_030 Hb_031527_020--Hb_003609_030 Hb_000732_120 Hb_000732_120 Hb_031527_020--Hb_000732_120 Hb_000336_250 Hb_000336_250 Hb_031527_020--Hb_000336_250 Hb_005489_080--Hb_000732_120 Hb_004128_050 Hb_004128_050 Hb_005489_080--Hb_004128_050 Hb_005489_080--Hb_003785_040 Hb_005489_080--Hb_111198_010 Hb_002025_110 Hb_002025_110 Hb_005489_080--Hb_002025_110 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_003785_040--Hb_004128_050 Hb_009503_030 Hb_009503_030 Hb_003785_040--Hb_009503_030 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_032202_110 Hb_032202_110 Hb_111198_010--Hb_032202_110 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_002078_110 Hb_002078_110 Hb_111198_010--Hb_002078_110 Hb_010738_010 Hb_010738_010 Hb_111198_010--Hb_010738_010 Hb_005993_050 Hb_005993_050 Hb_003609_030--Hb_005993_050 Hb_000562_090 Hb_000562_090 Hb_003609_030--Hb_000562_090 Hb_001252_010 Hb_001252_010 Hb_003609_030--Hb_001252_010 Hb_000179_030 Hb_000179_030 Hb_003609_030--Hb_000179_030 Hb_000502_050 Hb_000502_050 Hb_003609_030--Hb_000502_050 Hb_000959_270 Hb_000959_270 Hb_000732_120--Hb_000959_270 Hb_000832_090 Hb_000832_090 Hb_000732_120--Hb_000832_090 Hb_000732_120--Hb_111198_010 Hb_004970_090 Hb_004970_090 Hb_000732_120--Hb_004970_090 Hb_003052_140 Hb_003052_140 Hb_000336_250--Hb_003052_140 Hb_000336_250--Hb_003609_030 Hb_001946_040 Hb_001946_040 Hb_000336_250--Hb_001946_040 Hb_000479_220 Hb_000479_220 Hb_000336_250--Hb_000479_220 Hb_007416_180 Hb_007416_180 Hb_000336_250--Hb_007416_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.8428 62.6803 32.4557 27.7971 60.5998 53.1976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.7717 39.275 33.2539 26.4792 25.0171

CAGE analysis