Hb_031527_030

Information

Type -
Description -
Location Contig31527: 17286-18947
Sequence    

Annotation

kegg
ID rcu:RCOM_0112320
description nnp-1 protein, putative
nr
ID XP_012074750.1
description PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
swissprot
ID Q9Y7M6
description Ribosomal RNA-processing protein 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC9B6.07 PE=3 SV=1
trembl
ID A0A067KVA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10521 PE=4 SV=1
Gene Ontology
ID GO:0030688
description ribosomal rna processing protein 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 002_L15.ab1: 18327-19071

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031527_030 0.0 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
2 Hb_012286_040 0.0534003067 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
3 Hb_012055_040 0.0615932931 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_000003_100 0.0617177746 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
5 Hb_004037_020 0.0644299909 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
6 Hb_000089_180 0.0645228118 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
7 Hb_011849_040 0.0649070878 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_002890_130 0.066038725 - - tip120, putative [Ricinus communis]
9 Hb_016172_030 0.0673356344 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
10 Hb_102698_010 0.0673788483 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
11 Hb_000331_580 0.0678068268 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
12 Hb_000008_240 0.067906565 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004645_070 0.0689515623 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
14 Hb_005568_040 0.0692192652 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
15 Hb_022425_030 0.0695937372 - - PREDICTED: casein kinase I [Jatropha curcas]
16 Hb_001114_110 0.07187997 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
17 Hb_012092_060 0.0731143212 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
18 Hb_024650_080 0.0732886591 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
19 Hb_000317_100 0.0734546774 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
20 Hb_004030_080 0.0745528722 - - hypothetical protein JCGZ_25110 [Jatropha curcas]

Gene co-expression network

sample Hb_031527_030 Hb_031527_030 Hb_012286_040 Hb_012286_040 Hb_031527_030--Hb_012286_040 Hb_012055_040 Hb_012055_040 Hb_031527_030--Hb_012055_040 Hb_000003_100 Hb_000003_100 Hb_031527_030--Hb_000003_100 Hb_004037_020 Hb_004037_020 Hb_031527_030--Hb_004037_020 Hb_000089_180 Hb_000089_180 Hb_031527_030--Hb_000089_180 Hb_011849_040 Hb_011849_040 Hb_031527_030--Hb_011849_040 Hb_002749_060 Hb_002749_060 Hb_012286_040--Hb_002749_060 Hb_041327_010 Hb_041327_010 Hb_012286_040--Hb_041327_010 Hb_012286_040--Hb_000003_100 Hb_002890_130 Hb_002890_130 Hb_012286_040--Hb_002890_130 Hb_012092_060 Hb_012092_060 Hb_012286_040--Hb_012092_060 Hb_000494_050 Hb_000494_050 Hb_012055_040--Hb_000494_050 Hb_012518_070 Hb_012518_070 Hb_012055_040--Hb_012518_070 Hb_005215_010 Hb_005215_010 Hb_012055_040--Hb_005215_010 Hb_004410_120 Hb_004410_120 Hb_012055_040--Hb_004410_120 Hb_000317_100 Hb_000317_100 Hb_012055_040--Hb_000317_100 Hb_003216_090 Hb_003216_090 Hb_000003_100--Hb_003216_090 Hb_000331_580 Hb_000331_580 Hb_000003_100--Hb_000331_580 Hb_000003_100--Hb_002890_130 Hb_005563_060 Hb_005563_060 Hb_000003_100--Hb_005563_060 Hb_000008_240 Hb_000008_240 Hb_000003_100--Hb_000008_240 Hb_016172_030 Hb_016172_030 Hb_004037_020--Hb_016172_030 Hb_000345_160 Hb_000345_160 Hb_004037_020--Hb_000345_160 Hb_001481_060 Hb_001481_060 Hb_004037_020--Hb_001481_060 Hb_086063_020 Hb_086063_020 Hb_004037_020--Hb_086063_020 Hb_004037_020--Hb_000317_100 Hb_004705_170 Hb_004705_170 Hb_004037_020--Hb_004705_170 Hb_004128_130 Hb_004128_130 Hb_000089_180--Hb_004128_130 Hb_015026_130 Hb_015026_130 Hb_000089_180--Hb_015026_130 Hb_000085_450 Hb_000085_450 Hb_000089_180--Hb_000085_450 Hb_004143_100 Hb_004143_100 Hb_000089_180--Hb_004143_100 Hb_001408_110 Hb_001408_110 Hb_000089_180--Hb_001408_110 Hb_000089_180--Hb_004037_020 Hb_000009_500 Hb_000009_500 Hb_011849_040--Hb_000009_500 Hb_079326_020 Hb_079326_020 Hb_011849_040--Hb_079326_020 Hb_000402_230 Hb_000402_230 Hb_011849_040--Hb_000402_230 Hb_002026_210 Hb_002026_210 Hb_011849_040--Hb_002026_210 Hb_011849_040--Hb_004143_100 Hb_000614_210 Hb_000614_210 Hb_011849_040--Hb_000614_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.54227 15.7169 8.82084 16.3739 9.45064 10.0172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.16617 6.70883 7.99454 14.2953 11.7968

CAGE analysis