Hb_031527_040

Information

Type transcription factor
Description TF Family: FAR1
Location Contig31527: 19894-24117
Sequence    

Annotation

kegg
ID pop:POPTR_0007s01870g
description POPTRDRAFT_1082015; hypothetical protein
nr
ID XP_012074747.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
swissprot
ID Q9M8J3
description Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1
trembl
ID A0A067KLA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10520 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33254: 17156-19071 , PASA_asmbl_33255: 19942-24162 , PASA_asmbl_33256: 20033-20452
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031527_040 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
2 Hb_001242_060 0.0481659887 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
3 Hb_000563_320 0.0559029632 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
4 Hb_000016_250 0.0568904111 - - unnamed protein product [Malassezia sympodialis ATCC 42132]
5 Hb_007416_180 0.0580081361 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
6 Hb_000099_080 0.0631617643 - - kinesin light chain, putative [Ricinus communis]
7 Hb_001157_040 0.0635618139 - - casein kinase, putative [Ricinus communis]
8 Hb_003058_190 0.0639366029 - - PREDICTED: uncharacterized protein LOC105628951 isoform X1 [Jatropha curcas]
9 Hb_002739_100 0.0639917958 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
10 Hb_002256_030 0.0644828179 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000125_170 0.0648349406 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
12 Hb_000876_070 0.0664811047 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
13 Hb_000538_270 0.0668920114 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
14 Hb_004907_110 0.0675967873 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
15 Hb_001595_030 0.0675968045 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
16 Hb_000096_070 0.0681058087 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
17 Hb_000866_220 0.0681536905 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
18 Hb_000181_070 0.0708524943 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000030_300 0.0710698055 - - Thioredoxin, putative [Ricinus communis]
20 Hb_005779_060 0.0711590962 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_031527_040 Hb_031527_040 Hb_001242_060 Hb_001242_060 Hb_031527_040--Hb_001242_060 Hb_000563_320 Hb_000563_320 Hb_031527_040--Hb_000563_320 Hb_000016_250 Hb_000016_250 Hb_031527_040--Hb_000016_250 Hb_007416_180 Hb_007416_180 Hb_031527_040--Hb_007416_180 Hb_000099_080 Hb_000099_080 Hb_031527_040--Hb_000099_080 Hb_001157_040 Hb_001157_040 Hb_031527_040--Hb_001157_040 Hb_000757_060 Hb_000757_060 Hb_001242_060--Hb_000757_060 Hb_001242_060--Hb_000016_250 Hb_000030_300 Hb_000030_300 Hb_001242_060--Hb_000030_300 Hb_001242_060--Hb_000563_320 Hb_005779_060 Hb_005779_060 Hb_001242_060--Hb_005779_060 Hb_000563_320--Hb_000016_250 Hb_000563_320--Hb_001157_040 Hb_000563_320--Hb_005779_060 Hb_011995_010 Hb_011995_010 Hb_000563_320--Hb_011995_010 Hb_000016_250--Hb_005779_060 Hb_000016_250--Hb_001157_040 Hb_000096_070 Hb_000096_070 Hb_000016_250--Hb_000096_070 Hb_000538_270 Hb_000538_270 Hb_007416_180--Hb_000538_270 Hb_004684_010 Hb_004684_010 Hb_007416_180--Hb_004684_010 Hb_000181_070 Hb_000181_070 Hb_007416_180--Hb_000181_070 Hb_001248_060 Hb_001248_060 Hb_007416_180--Hb_001248_060 Hb_001409_020 Hb_001409_020 Hb_007416_180--Hb_001409_020 Hb_010128_080 Hb_010128_080 Hb_000099_080--Hb_010128_080 Hb_007691_030 Hb_007691_030 Hb_000099_080--Hb_007691_030 Hb_010712_030 Hb_010712_030 Hb_000099_080--Hb_010712_030 Hb_000395_190 Hb_000395_190 Hb_000099_080--Hb_000395_190 Hb_000099_080--Hb_000563_320 Hb_000866_220 Hb_000866_220 Hb_001157_040--Hb_000866_220 Hb_001838_060 Hb_001838_060 Hb_001157_040--Hb_001838_060 Hb_000331_670 Hb_000331_670 Hb_001157_040--Hb_000331_670 Hb_001157_040--Hb_000538_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.69546 7.57176 3.90947 4.72732 8.04198 7.72442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.26231 9.90094 9.37702 4.54661 3.48165

CAGE analysis