Hb_031527_070

Information

Type -
Description -
Location Contig31527: 41546-47585
Sequence    

Annotation

kegg
ID pop:POPTR_0004s07320g
description POPTRDRAFT_648243; isocitrate dehydrogenase family protein
nr
ID XP_012074735.1
description PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
swissprot
ID P50218
description Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A0A067KV94
description Isocitrate dehydrogenase [NADP] OS=Jatropha curcas GN=JCGZ_10511 PE=3 SV=1
Gene Ontology
ID GO:0005886
description isocitrate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33260: 42084-47414 , PASA_asmbl_33261: 42511-47414 , PASA_asmbl_33262: 44641-45513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031527_070 0.0 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
2 Hb_005333_030 0.1352479263 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
3 Hb_003025_050 0.1498018768 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
4 Hb_003096_040 0.1531007792 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
5 Hb_002890_100 0.1584462194 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
6 Hb_009028_030 0.1619966683 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
7 Hb_004195_060 0.1622910179 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]
8 Hb_004017_040 0.1633249787 - - kinetochore protein nuf2, putative [Ricinus communis]
9 Hb_005510_010 0.1653456547 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
10 Hb_010531_050 0.1722939646 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
11 Hb_143960_010 0.1727450695 - - -
12 Hb_000261_290 0.1733564026 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
13 Hb_057451_010 0.1736622936 - - PREDICTED: uncharacterized protein LOC105635588 [Jatropha curcas]
14 Hb_008864_040 0.1749997369 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
15 Hb_000175_350 0.1751855211 - - phopholipase d alpha, putative [Ricinus communis]
16 Hb_003710_040 0.1757034847 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
17 Hb_003388_050 0.1759730715 - - -
18 Hb_000215_100 0.1759985549 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002666_080 0.1760310423 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000521_170 0.1761812364 - - PREDICTED: callose synthase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_031527_070 Hb_031527_070 Hb_005333_030 Hb_005333_030 Hb_031527_070--Hb_005333_030 Hb_003025_050 Hb_003025_050 Hb_031527_070--Hb_003025_050 Hb_003096_040 Hb_003096_040 Hb_031527_070--Hb_003096_040 Hb_002890_100 Hb_002890_100 Hb_031527_070--Hb_002890_100 Hb_009028_030 Hb_009028_030 Hb_031527_070--Hb_009028_030 Hb_004195_060 Hb_004195_060 Hb_031527_070--Hb_004195_060 Hb_002666_080 Hb_002666_080 Hb_005333_030--Hb_002666_080 Hb_003710_040 Hb_003710_040 Hb_005333_030--Hb_003710_040 Hb_167381_020 Hb_167381_020 Hb_005333_030--Hb_167381_020 Hb_004017_040 Hb_004017_040 Hb_005333_030--Hb_004017_040 Hb_118840_050 Hb_118840_050 Hb_005333_030--Hb_118840_050 Hb_000261_290 Hb_000261_290 Hb_005333_030--Hb_000261_290 Hb_003025_050--Hb_002666_080 Hb_003025_050--Hb_002890_100 Hb_003780_090 Hb_003780_090 Hb_003025_050--Hb_003780_090 Hb_003025_050--Hb_118840_050 Hb_003025_050--Hb_005333_030 Hb_000215_190 Hb_000215_190 Hb_003025_050--Hb_000215_190 Hb_010261_010 Hb_010261_010 Hb_003096_040--Hb_010261_010 Hb_153161_010 Hb_153161_010 Hb_003096_040--Hb_153161_010 Hb_000175_350 Hb_000175_350 Hb_003096_040--Hb_000175_350 Hb_178127_010 Hb_178127_010 Hb_003096_040--Hb_178127_010 Hb_005510_010 Hb_005510_010 Hb_003096_040--Hb_005510_010 Hb_002890_100--Hb_118840_050 Hb_002890_100--Hb_002666_080 Hb_000184_150 Hb_000184_150 Hb_002890_100--Hb_000184_150 Hb_029695_020 Hb_029695_020 Hb_002890_100--Hb_029695_020 Hb_001047_200 Hb_001047_200 Hb_002890_100--Hb_001047_200 Hb_000917_160 Hb_000917_160 Hb_002890_100--Hb_000917_160 Hb_057451_010 Hb_057451_010 Hb_009028_030--Hb_057451_010 Hb_009028_030--Hb_003710_040 Hb_000265_250 Hb_000265_250 Hb_009028_030--Hb_000265_250 Hb_003157_010 Hb_003157_010 Hb_009028_030--Hb_003157_010 Hb_004899_070 Hb_004899_070 Hb_009028_030--Hb_004899_070 Hb_011465_030 Hb_011465_030 Hb_009028_030--Hb_011465_030 Hb_000589_040 Hb_000589_040 Hb_004195_060--Hb_000589_040 Hb_030627_060 Hb_030627_060 Hb_004195_060--Hb_030627_060 Hb_111985_080 Hb_111985_080 Hb_004195_060--Hb_111985_080 Hb_004970_160 Hb_004970_160 Hb_004195_060--Hb_004970_160 Hb_010417_060 Hb_010417_060 Hb_004195_060--Hb_010417_060 Hb_000504_150 Hb_000504_150 Hb_004195_060--Hb_000504_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.8546 93.284 32.6689 51.1202 115.41 49.4895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6313 8.05775 6.8817 69.8804 11.6146

CAGE analysis