Hb_031527_080

Information

Type -
Description -
Location Contig31527: 49402-56213
Sequence    

Annotation

kegg
ID rcu:RCOM_1605130
description utp-glucose-1-phosphate uridylyltransferase, putative (EC:2.7.7.9)
nr
ID XP_002526594.1
description utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
swissprot
ID Q9SDX3
description UTP--glucose-1-phosphate uridylyltransferase OS=Musa acuminata GN=UGPA PE=2 SV=1
trembl
ID B9SKS5
description Utp-glucose-1-phosphate uridylyltransferase, putative OS=Ricinus communis GN=RCOM_1605130 PE=4 SV=1
Gene Ontology
ID GO:0005737
description utp--glucose-1-phosphate uridylyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33264: 49542-56556
cDNA
(Sanger)
(ID:Location)		 005_A02.ab1: 54914-56554 , 026_N09.ab1: 55065-56554 , 033_C23.ab1: 54942-56554 , 038_E15.ab1: 54937-56554 , 040_C22.ab1: 54947-56554 , 041_B16.ab1: 54926-56554

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031527_080 0.0 - - utp-glucose-1-phosphate uridylyltransferase, putative [Ricinus communis]
2 Hb_003994_220 0.0641197108 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
3 Hb_003038_040 0.0833356945 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
4 Hb_001021_010 0.0855299139 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
5 Hb_000009_060 0.0857363701 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
6 Hb_001097_040 0.0902549422 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
7 Hb_002686_200 0.0910065375 - - glucosidase II beta subunit, putative [Ricinus communis]
8 Hb_001703_050 0.0919623772 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
9 Hb_000494_030 0.0940044317 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
10 Hb_005846_050 0.0964029215 - - PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
11 Hb_001587_030 0.096450196 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
12 Hb_000703_330 0.0974839838 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000649_060 0.0976375989 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
14 Hb_000161_210 0.0976722578 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
15 Hb_008289_040 0.0984599998 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
16 Hb_065968_010 0.1008338055 - - PREDICTED: probable glycosyltransferase At3g07620 isoform X2 [Jatropha curcas]
17 Hb_001226_130 0.1018543195 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
18 Hb_001586_030 0.1020017905 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
19 Hb_001616_070 0.1043379285 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
20 Hb_004096_110 0.1048466657 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_031527_080 Hb_031527_080 Hb_003994_220 Hb_003994_220 Hb_031527_080--Hb_003994_220 Hb_003038_040 Hb_003038_040 Hb_031527_080--Hb_003038_040 Hb_001021_010 Hb_001021_010 Hb_031527_080--Hb_001021_010 Hb_000009_060 Hb_000009_060 Hb_031527_080--Hb_000009_060 Hb_001097_040 Hb_001097_040 Hb_031527_080--Hb_001097_040 Hb_002686_200 Hb_002686_200 Hb_031527_080--Hb_002686_200 Hb_003994_220--Hb_003038_040 Hb_001703_050 Hb_001703_050 Hb_003994_220--Hb_001703_050 Hb_003097_140 Hb_003097_140 Hb_003994_220--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_003994_220--Hb_007416_210 Hb_003994_220--Hb_001021_010 Hb_000161_210 Hb_000161_210 Hb_003038_040--Hb_000161_210 Hb_003038_040--Hb_001097_040 Hb_065500_020 Hb_065500_020 Hb_003038_040--Hb_065500_020 Hb_001159_030 Hb_001159_030 Hb_003038_040--Hb_001159_030 Hb_010042_030 Hb_010042_030 Hb_003038_040--Hb_010042_030 Hb_001021_010--Hb_000009_060 Hb_000389_030 Hb_000389_030 Hb_001021_010--Hb_000389_030 Hb_001021_010--Hb_001097_040 Hb_000703_330 Hb_000703_330 Hb_001021_010--Hb_000703_330 Hb_004525_040 Hb_004525_040 Hb_001021_010--Hb_004525_040 Hb_001616_070 Hb_001616_070 Hb_000009_060--Hb_001616_070 Hb_000009_060--Hb_000703_330 Hb_018845_010 Hb_018845_010 Hb_000009_060--Hb_018845_010 Hb_007416_070 Hb_007416_070 Hb_000009_060--Hb_007416_070 Hb_000009_060--Hb_000389_030 Hb_001085_080 Hb_001085_080 Hb_001097_040--Hb_001085_080 Hb_007137_050 Hb_007137_050 Hb_001097_040--Hb_007137_050 Hb_000023_300 Hb_000023_300 Hb_001097_040--Hb_000023_300 Hb_001097_040--Hb_001159_030 Hb_000152_700 Hb_000152_700 Hb_001097_040--Hb_000152_700 Hb_065968_010 Hb_065968_010 Hb_002686_200--Hb_065968_010 Hb_159809_070 Hb_159809_070 Hb_002686_200--Hb_159809_070 Hb_001269_600 Hb_001269_600 Hb_002686_200--Hb_001269_600 Hb_003159_050 Hb_003159_050 Hb_002686_200--Hb_003159_050 Hb_007933_040 Hb_007933_040 Hb_002686_200--Hb_007933_040 Hb_006824_010 Hb_006824_010 Hb_002686_200--Hb_006824_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5687 35.5635 52.1975 90.1069 29.1248 22.7782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7106 16.8437 42.8485 80.5657 46.5976

CAGE analysis