Hb_031754_010

Information

Type transcription factor
Description TF Family: LIM
Location Contig31754: 18392-24333
Sequence    

Annotation

kegg
ID rcu:RCOM_0411700
description zinc ion binding protein, putative
nr
ID XP_002533282.1
description zinc ion binding protein, putative [Ricinus communis]
swissprot
ID Q8W4F0
description Protein DA1-related 1 OS=Arabidopsis thaliana GN=DAR1 PE=1 SV=3
trembl
ID B9T4W3
description Zinc ion binding protein, putative OS=Ricinus communis GN=RCOM_0411700 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein da1-related 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33452: 18565-24476 , PASA_asmbl_33453: 18568-24789 , PASA_asmbl_33454: 20699-21046
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031754_010 0.0 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
2 Hb_000335_010 0.0503988055 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_001975_020 0.0560977528 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
4 Hb_000035_040 0.0587817864 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
5 Hb_002883_010 0.0619927688 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
6 Hb_046615_020 0.0657159256 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
7 Hb_000424_010 0.0667277973 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
8 Hb_002400_180 0.0682919472 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002652_040 0.0690593519 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
10 Hb_001366_040 0.0701579643 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
11 Hb_000631_150 0.0707179627 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
12 Hb_000317_440 0.0720754282 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
13 Hb_002043_170 0.0721094803 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
14 Hb_175338_020 0.0735235625 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
15 Hb_003581_120 0.0735493611 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
16 Hb_001437_100 0.0739135683 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
17 Hb_000789_080 0.0751529347 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
18 Hb_005295_040 0.0763694363 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
19 Hb_002675_060 0.0796751025 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
20 Hb_000531_090 0.0796756901 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]

Gene co-expression network

sample Hb_031754_010 Hb_031754_010 Hb_000335_010 Hb_000335_010 Hb_031754_010--Hb_000335_010 Hb_001975_020 Hb_001975_020 Hb_031754_010--Hb_001975_020 Hb_000035_040 Hb_000035_040 Hb_031754_010--Hb_000035_040 Hb_002883_010 Hb_002883_010 Hb_031754_010--Hb_002883_010 Hb_046615_020 Hb_046615_020 Hb_031754_010--Hb_046615_020 Hb_000424_010 Hb_000424_010 Hb_031754_010--Hb_000424_010 Hb_000457_060 Hb_000457_060 Hb_000335_010--Hb_000457_060 Hb_000789_080 Hb_000789_080 Hb_000335_010--Hb_000789_080 Hb_001437_100 Hb_001437_100 Hb_000335_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000335_010--Hb_002043_170 Hb_000335_010--Hb_002883_010 Hb_000327_310 Hb_000327_310 Hb_001975_020--Hb_000327_310 Hb_001975_020--Hb_046615_020 Hb_005295_040 Hb_005295_040 Hb_001975_020--Hb_005295_040 Hb_000116_280 Hb_000116_280 Hb_001975_020--Hb_000116_280 Hb_003018_160 Hb_003018_160 Hb_001975_020--Hb_003018_160 Hb_002652_040 Hb_002652_040 Hb_000035_040--Hb_002652_040 Hb_000035_040--Hb_000424_010 Hb_000331_190 Hb_000331_190 Hb_000035_040--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000035_040--Hb_000531_090 Hb_000035_040--Hb_002043_170 Hb_002883_010--Hb_001437_100 Hb_002883_010--Hb_002043_170 Hb_000317_440 Hb_000317_440 Hb_002883_010--Hb_000317_440 Hb_002883_010--Hb_002652_040 Hb_000239_070 Hb_000239_070 Hb_002883_010--Hb_000239_070 Hb_046615_020--Hb_002043_170 Hb_000230_370 Hb_000230_370 Hb_046615_020--Hb_000230_370 Hb_004096_020 Hb_004096_020 Hb_046615_020--Hb_004096_020 Hb_046615_020--Hb_000531_090 Hb_000424_010--Hb_002652_040 Hb_002221_050 Hb_002221_050 Hb_000424_010--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_000424_010--Hb_000529_260 Hb_000139_250 Hb_000139_250 Hb_000424_010--Hb_000139_250 Hb_175338_020 Hb_175338_020 Hb_000424_010--Hb_175338_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
178.273 83.5422 32.4461 45.7821 194.224 188.915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
93.5626 40.6191 77.5172 79.7097 46.5722

CAGE analysis