Hb_031821_010

Information

Type -
Description -
Location Contig31821: 7599-7940
Sequence    

Annotation

kegg
ID rcu:RCOM_1096900
description ccd1, putative
nr
ID XP_002524717.1
description ccd1, putative [Ricinus communis]
swissprot
ID Q9LSQ6
description Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1
trembl
ID B9SFE8
description Ccd1, putative OS=Ricinus communis GN=RCOM_1096900 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein pbp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33590: 8032-8339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031821_010 0.0 - - ccd1, putative [Ricinus communis]
2 Hb_001414_050 0.1402458496 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
3 Hb_002965_080 0.1411335921 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
4 Hb_041895_040 0.159445456 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001758_130 0.1672235759 - - hypothetical protein JCGZ_25129 [Jatropha curcas]
6 Hb_001396_070 0.1674318792 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000671_060 0.1710202916 - - protein binding protein, putative [Ricinus communis]
8 Hb_000123_140 0.1772196653 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
9 Hb_002900_150 0.1778352011 - - PREDICTED: syntaxin-81 [Jatropha curcas]
10 Hb_000523_030 0.1789495991 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
11 Hb_000445_100 0.1793723291 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
12 Hb_008494_030 0.182472327 - - catalytic, putative [Ricinus communis]
13 Hb_000336_180 0.183161247 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001776_200 0.1857222008 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
15 Hb_000120_350 0.1870880189 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
16 Hb_012753_210 0.1883890781 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
17 Hb_003090_150 0.1896167369 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
18 Hb_005394_010 0.1897070863 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
19 Hb_011671_280 0.1898375591 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF106-like [Populus euphratica]
20 Hb_001519_060 0.1900214905 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_031821_010 Hb_031821_010 Hb_001414_050 Hb_001414_050 Hb_031821_010--Hb_001414_050 Hb_002965_080 Hb_002965_080 Hb_031821_010--Hb_002965_080 Hb_041895_040 Hb_041895_040 Hb_031821_010--Hb_041895_040 Hb_001758_130 Hb_001758_130 Hb_031821_010--Hb_001758_130 Hb_001396_070 Hb_001396_070 Hb_031821_010--Hb_001396_070 Hb_000671_060 Hb_000671_060 Hb_031821_010--Hb_000671_060 Hb_001776_200 Hb_001776_200 Hb_001414_050--Hb_001776_200 Hb_006935_040 Hb_006935_040 Hb_001414_050--Hb_006935_040 Hb_000008_390 Hb_000008_390 Hb_001414_050--Hb_000008_390 Hb_011671_280 Hb_011671_280 Hb_001414_050--Hb_011671_280 Hb_001414_050--Hb_002965_080 Hb_001519_060 Hb_001519_060 Hb_002965_080--Hb_001519_060 Hb_002249_170 Hb_002249_170 Hb_002965_080--Hb_002249_170 Hb_011671_110 Hb_011671_110 Hb_002965_080--Hb_011671_110 Hb_001396_120 Hb_001396_120 Hb_002965_080--Hb_001396_120 Hb_007224_010 Hb_007224_010 Hb_002965_080--Hb_007224_010 Hb_000336_180 Hb_000336_180 Hb_002965_080--Hb_000336_180 Hb_005394_010 Hb_005394_010 Hb_041895_040--Hb_005394_010 Hb_015026_040 Hb_015026_040 Hb_041895_040--Hb_015026_040 Hb_001246_160 Hb_001246_160 Hb_041895_040--Hb_001246_160 Hb_000163_230 Hb_000163_230 Hb_041895_040--Hb_000163_230 Hb_001769_110 Hb_001769_110 Hb_041895_040--Hb_001769_110 Hb_000594_110 Hb_000594_110 Hb_041895_040--Hb_000594_110 Hb_092062_010 Hb_092062_010 Hb_001758_130--Hb_092062_010 Hb_025905_010 Hb_025905_010 Hb_001758_130--Hb_025905_010 Hb_003090_150 Hb_003090_150 Hb_001758_130--Hb_003090_150 Hb_001758_130--Hb_000671_060 Hb_001758_130--Hb_001414_050 Hb_003925_060 Hb_003925_060 Hb_001396_070--Hb_003925_060 Hb_000640_190 Hb_000640_190 Hb_001396_070--Hb_000640_190 Hb_033152_090 Hb_033152_090 Hb_001396_070--Hb_033152_090 Hb_000603_190 Hb_000603_190 Hb_001396_070--Hb_000603_190 Hb_011930_100 Hb_011930_100 Hb_001396_070--Hb_011930_100 Hb_002248_130 Hb_002248_130 Hb_001396_070--Hb_002248_130 Hb_000671_060--Hb_003090_150 Hb_000671_060--Hb_000163_230 Hb_002311_140 Hb_002311_140 Hb_000671_060--Hb_002311_140 Hb_012305_140 Hb_012305_140 Hb_000671_060--Hb_012305_140 Hb_001196_080 Hb_001196_080 Hb_000671_060--Hb_001196_080 Hb_000261_280 Hb_000261_280 Hb_000671_060--Hb_000261_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.69161 2.53368 3.21969 2.65198 0.880583 0.641062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.549839 0.648312 0 0.193237 1.07114

CAGE analysis