Hb_031822_020

Information

Type -
Description -
Location Contig31822: 6269-6836
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010279074.1
description PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID C6TCV3
description Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031822_020 0.0 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
2 Hb_001804_020 0.0867759707 - - hypothetical protein POPTR_0006s09110g [Populus trichocarpa]
3 Hb_002701_200 0.1061913124 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
4 Hb_012753_140 0.1110663191 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
5 Hb_007441_320 0.1127896403 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
6 Hb_120496_010 0.1173682474 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
7 Hb_000224_070 0.1189031899 - - -
8 Hb_103942_020 0.1192450718 - - unknown [Zea mays]
9 Hb_000628_080 0.1231181611 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
10 Hb_001277_390 0.1236020533 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
11 Hb_118941_010 0.1243910345 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_017524_020 0.1245089016 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
13 Hb_000027_020 0.1245868526 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
14 Hb_001628_040 0.1257652768 - - PREDICTED: beta-galactosidase 13-like [Populus euphratica]
15 Hb_017862_040 0.1261040293 - - PREDICTED: pleiotropic drug resistance protein 3-like [Prunus mume]
16 Hb_011689_090 0.1296972284 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
17 Hb_001454_030 0.1306510303 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
18 Hb_009111_060 0.1312717909 - - PREDICTED: sodium transporter HKT1-like [Jatropha curcas]
19 Hb_003252_030 0.1317636242 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
20 Hb_000645_040 0.131781034 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_031822_020 Hb_031822_020 Hb_001804_020 Hb_001804_020 Hb_031822_020--Hb_001804_020 Hb_002701_200 Hb_002701_200 Hb_031822_020--Hb_002701_200 Hb_012753_140 Hb_012753_140 Hb_031822_020--Hb_012753_140 Hb_007441_320 Hb_007441_320 Hb_031822_020--Hb_007441_320 Hb_120496_010 Hb_120496_010 Hb_031822_020--Hb_120496_010 Hb_000224_070 Hb_000224_070 Hb_031822_020--Hb_000224_070 Hb_001804_020--Hb_007441_320 Hb_003607_040 Hb_003607_040 Hb_001804_020--Hb_003607_040 Hb_001804_020--Hb_002701_200 Hb_103942_020 Hb_103942_020 Hb_001804_020--Hb_103942_020 Hb_002215_020 Hb_002215_020 Hb_001804_020--Hb_002215_020 Hb_000628_080 Hb_000628_080 Hb_002701_200--Hb_000628_080 Hb_000905_130 Hb_000905_130 Hb_002701_200--Hb_000905_130 Hb_000270_590 Hb_000270_590 Hb_002701_200--Hb_000270_590 Hb_001247_050 Hb_001247_050 Hb_002701_200--Hb_001247_050 Hb_000296_030 Hb_000296_030 Hb_002701_200--Hb_000296_030 Hb_137821_010 Hb_137821_010 Hb_012753_140--Hb_137821_010 Hb_003906_040 Hb_003906_040 Hb_012753_140--Hb_003906_040 Hb_000629_140 Hb_000629_140 Hb_012753_140--Hb_000629_140 Hb_178343_010 Hb_178343_010 Hb_012753_140--Hb_178343_010 Hb_005694_140 Hb_005694_140 Hb_012753_140--Hb_005694_140 Hb_007441_320--Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_007441_320--Hb_001454_030 Hb_007441_320--Hb_003607_040 Hb_000527_090 Hb_000527_090 Hb_007441_320--Hb_000527_090 Hb_007441_320--Hb_120496_010 Hb_006452_080 Hb_006452_080 Hb_007441_320--Hb_006452_080 Hb_001277_390 Hb_001277_390 Hb_120496_010--Hb_001277_390 Hb_000203_110 Hb_000203_110 Hb_120496_010--Hb_000203_110 Hb_003747_080 Hb_003747_080 Hb_120496_010--Hb_003747_080 Hb_118941_010 Hb_118941_010 Hb_120496_010--Hb_118941_010 Hb_120496_010--Hb_000224_070 Hb_000224_070--Hb_001277_390 Hb_000224_070--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000224_070--Hb_000645_040 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_001892_040 Hb_001892_040 Hb_000224_070--Hb_001892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.685365 3.90596 2.5416 165.055 0.323283 0.156244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.957555 1.27308 0.753708 0.279533

CAGE analysis