Hb_031862_020

Information

Type -
Description -
Location Contig31862: 44213-46558
Sequence    

Annotation

kegg
ID rcu:RCOM_0446110
description ankyrin repeat-containing protein, putative
nr
ID XP_012066668.1
description PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID A0A067L1U2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00238 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33616: 44838-45677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_020 0.0 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
2 Hb_167272_010 0.0701833893 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
3 Hb_000237_070 0.0724513177 - - Purple acid phosphatase precursor, putative [Ricinus communis]
4 Hb_000501_040 0.0741413121 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000085_220 0.0882735774 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000382_030 0.0928933726 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
7 Hb_007420_010 0.1021393132 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X2 [Jatropha curcas]
8 Hb_187991_010 0.107347143 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
9 Hb_000318_050 0.1125612555 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
10 Hb_001377_130 0.1163359472 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
11 Hb_000417_120 0.1179952438 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
12 Hb_063523_010 0.1186042333 - - -
13 Hb_001538_050 0.1209767735 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
14 Hb_001515_030 0.1226227913 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_006269_010 0.1233974426 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
16 Hb_014361_020 0.1234127407 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
17 Hb_009803_030 0.1241591192 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
18 Hb_046101_010 0.1243830381 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
19 Hb_033045_010 0.1246187758 - - copine, putative [Ricinus communis]
20 Hb_003387_080 0.1266625156 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_031862_020 Hb_031862_020 Hb_167272_010 Hb_167272_010 Hb_031862_020--Hb_167272_010 Hb_000237_070 Hb_000237_070 Hb_031862_020--Hb_000237_070 Hb_000501_040 Hb_000501_040 Hb_031862_020--Hb_000501_040 Hb_000085_220 Hb_000085_220 Hb_031862_020--Hb_000085_220 Hb_000382_030 Hb_000382_030 Hb_031862_020--Hb_000382_030 Hb_007420_010 Hb_007420_010 Hb_031862_020--Hb_007420_010 Hb_001515_030 Hb_001515_030 Hb_167272_010--Hb_001515_030 Hb_167272_010--Hb_007420_010 Hb_167272_010--Hb_000237_070 Hb_009803_030 Hb_009803_030 Hb_167272_010--Hb_009803_030 Hb_167272_010--Hb_000085_220 Hb_000237_070--Hb_000382_030 Hb_005867_030 Hb_005867_030 Hb_000237_070--Hb_005867_030 Hb_000318_050 Hb_000318_050 Hb_000237_070--Hb_000318_050 Hb_001377_130 Hb_001377_130 Hb_000237_070--Hb_001377_130 Hb_000501_040--Hb_007420_010 Hb_000501_040--Hb_167272_010 Hb_029576_100 Hb_029576_100 Hb_000501_040--Hb_029576_100 Hb_127661_010 Hb_127661_010 Hb_000501_040--Hb_127661_010 Hb_023344_130 Hb_023344_130 Hb_000501_040--Hb_023344_130 Hb_004166_020 Hb_004166_020 Hb_000085_220--Hb_004166_020 Hb_014361_020 Hb_014361_020 Hb_000085_220--Hb_014361_020 Hb_000092_030 Hb_000092_030 Hb_000085_220--Hb_000092_030 Hb_006269_010 Hb_006269_010 Hb_000085_220--Hb_006269_010 Hb_000382_030--Hb_001377_130 Hb_000382_030--Hb_000318_050 Hb_000382_030--Hb_000085_220 Hb_001123_170 Hb_001123_170 Hb_000382_030--Hb_001123_170 Hb_114310_050 Hb_114310_050 Hb_007420_010--Hb_114310_050 Hb_007420_020 Hb_007420_020 Hb_007420_010--Hb_007420_020 Hb_007420_010--Hb_009803_030 Hb_007420_010--Hb_001515_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.978422 0.595777 0.322027 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.603441 0.344688

CAGE analysis