Hb_031862_090

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig31862: 120369-123197
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01660g
description NBS-LRR resistance gene-like protein ARGH35
nr
ID XP_012069176.1
description PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID A0A067L9Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24943 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_090 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
2 Hb_005203_010 0.0475944494 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
3 Hb_002282_030 0.0714975388 - - -
4 Hb_000891_060 0.0789743227 - - hypothetical protein JCGZ_11234 [Jatropha curcas]
5 Hb_000616_060 0.0835560647 - - -
6 Hb_027445_080 0.0858979833 transcription factor TF Family: LOB LOB domain protein 25 [Populus trichocarpa]
7 Hb_000575_010 0.0860719125 - - PREDICTED: uncharacterized protein LOC103454030 [Malus domestica]
8 Hb_081448_010 0.0941687386 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
9 Hb_001021_140 0.0951695953 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_002762_070 0.1040726036 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
11 Hb_028207_030 0.1122964729 - - PREDICTED: non-specific lipid-transfer protein 8-like [Citrus sinensis]
12 Hb_031954_010 0.1139365304 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_004341_010 0.1163013458 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
14 Hb_009543_040 0.1220927624 - - -
15 Hb_004837_170 0.126758201 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]
16 Hb_000703_320 0.1286949155 - - receptor-kinase, putative [Ricinus communis]
17 Hb_007850_040 0.1306145376 - - conserved hypothetical protein [Ricinus communis]
18 Hb_017661_020 0.1308531931 - - hypothetical protein JCGZ_11176 [Jatropha curcas]
19 Hb_004156_010 0.1343720268 - - hypothetical protein JCGZ_08917 [Jatropha curcas]
20 Hb_069232_010 0.137124282 - - PREDICTED: 60S ribosomal protein L37-3-like [Vitis vinifera]

Gene co-expression network

sample Hb_031862_090 Hb_031862_090 Hb_005203_010 Hb_005203_010 Hb_031862_090--Hb_005203_010 Hb_002282_030 Hb_002282_030 Hb_031862_090--Hb_002282_030 Hb_000891_060 Hb_000891_060 Hb_031862_090--Hb_000891_060 Hb_000616_060 Hb_000616_060 Hb_031862_090--Hb_000616_060 Hb_027445_080 Hb_027445_080 Hb_031862_090--Hb_027445_080 Hb_000575_010 Hb_000575_010 Hb_031862_090--Hb_000575_010 Hb_005203_010--Hb_027445_080 Hb_005203_010--Hb_002282_030 Hb_005203_010--Hb_000891_060 Hb_005203_010--Hb_000616_060 Hb_005203_010--Hb_000575_010 Hb_002282_030--Hb_000891_060 Hb_002282_030--Hb_000616_060 Hb_002282_030--Hb_000575_010 Hb_009543_040 Hb_009543_040 Hb_002282_030--Hb_009543_040 Hb_001157_130 Hb_001157_130 Hb_002282_030--Hb_001157_130 Hb_000891_060--Hb_000616_060 Hb_000891_060--Hb_000575_010 Hb_000891_060--Hb_009543_040 Hb_000891_060--Hb_001157_130 Hb_132438_010 Hb_132438_010 Hb_000891_060--Hb_132438_010 Hb_000616_060--Hb_000575_010 Hb_000616_060--Hb_009543_040 Hb_000616_060--Hb_001157_130 Hb_000616_060--Hb_132438_010 Hb_002762_070 Hb_002762_070 Hb_027445_080--Hb_002762_070 Hb_017661_020 Hb_017661_020 Hb_027445_080--Hb_017661_020 Hb_004837_170 Hb_004837_170 Hb_027445_080--Hb_004837_170 Hb_027445_080--Hb_002282_030 Hb_000575_010--Hb_009543_040 Hb_000575_010--Hb_001157_130 Hb_000575_010--Hb_132438_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.24816 0 0.153019 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.178596 0

CAGE analysis