Hb_031862_100

Information

Type -
Description -
Location Contig31862: 124872-127991
Sequence    

Annotation

kegg
ID rcu:RCOM_0884440
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002522615.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q94B59
description Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1
trembl
ID B9S9E6
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0884440 PE=4 SV=1
Gene Ontology
ID GO:0004737
description pentatricopeptide repeat-containing protein mitochondrial isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33619: 125462-125676
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_100 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001386_040 0.057725327 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
3 Hb_015934_070 0.0602514621 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
4 Hb_001314_050 0.0642694424 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
5 Hb_001189_070 0.0651556628 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
6 Hb_006907_130 0.0665565552 - - unnamed protein product [Coffea canephora]
7 Hb_005914_170 0.0679400767 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
8 Hb_000081_160 0.0698375773 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
9 Hb_000431_170 0.0707407507 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
10 Hb_002169_040 0.0724272381 - - unknown [Populus trichocarpa]
11 Hb_002014_020 0.0725052026 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
12 Hb_001828_150 0.0727120143 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
13 Hb_002183_060 0.0747891814 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
14 Hb_005305_110 0.0752697818 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
15 Hb_002111_040 0.0761140154 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
16 Hb_002197_050 0.0763917405 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
17 Hb_000948_160 0.0765961347 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
18 Hb_007676_080 0.0768102738 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
19 Hb_001016_120 0.0772586746 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
20 Hb_007017_030 0.0780298499 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_031862_100 Hb_031862_100 Hb_001386_040 Hb_001386_040 Hb_031862_100--Hb_001386_040 Hb_015934_070 Hb_015934_070 Hb_031862_100--Hb_015934_070 Hb_001314_050 Hb_001314_050 Hb_031862_100--Hb_001314_050 Hb_001189_070 Hb_001189_070 Hb_031862_100--Hb_001189_070 Hb_006907_130 Hb_006907_130 Hb_031862_100--Hb_006907_130 Hb_005914_170 Hb_005914_170 Hb_031862_100--Hb_005914_170 Hb_000948_160 Hb_000948_160 Hb_001386_040--Hb_000948_160 Hb_002183_060 Hb_002183_060 Hb_001386_040--Hb_002183_060 Hb_007928_030 Hb_007928_030 Hb_001386_040--Hb_007928_030 Hb_000465_390 Hb_000465_390 Hb_001386_040--Hb_000465_390 Hb_000053_020 Hb_000053_020 Hb_001386_040--Hb_000053_020 Hb_025240_040 Hb_025240_040 Hb_015934_070--Hb_025240_040 Hb_127552_030 Hb_127552_030 Hb_015934_070--Hb_127552_030 Hb_015934_070--Hb_006907_130 Hb_007017_030 Hb_007017_030 Hb_015934_070--Hb_007017_030 Hb_001369_690 Hb_001369_690 Hb_015934_070--Hb_001369_690 Hb_000392_430 Hb_000392_430 Hb_001314_050--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_001314_050--Hb_000111_320 Hb_001671_100 Hb_001671_100 Hb_001314_050--Hb_001671_100 Hb_001314_050--Hb_005914_170 Hb_001314_050--Hb_001189_070 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_000347_240 Hb_000347_240 Hb_001189_070--Hb_000347_240 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_002000_080 Hb_002000_080 Hb_006907_130--Hb_002000_080 Hb_006907_130--Hb_001386_040 Hb_002111_040 Hb_002111_040 Hb_006907_130--Hb_002111_040 Hb_001545_080 Hb_001545_080 Hb_006907_130--Hb_001545_080 Hb_000210_120 Hb_000210_120 Hb_005914_170--Hb_000210_120 Hb_005914_170--Hb_011344_120 Hb_003633_050 Hb_003633_050 Hb_005914_170--Hb_003633_050 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.8524 2.52615 4.66327 7.35401 5.04624 5.79635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.12578 9.8842 6.97528 8.86246 5.81239

CAGE analysis