Hb_031862_110

Information

Type -
Description -
Location Contig31862: 129891-134856
Sequence    

Annotation

kegg
ID rcu:RCOM_0884450
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID AEO21918.1
description calcium-dependent protein kinase [Hevea brasiliensis]
swissprot
ID Q8W490
description Serine/threonine-protein kinase PEPKR2 OS=Arabidopsis thaliana GN=PEPKR2 PE=2 SV=1
trembl
ID G3M0D5
description Calcium-dependent protein kinase OS=Hevea brasiliensis GN=CDPK2 PE=2 SV=1
Gene Ontology
ID GO:0004683
description serine threonine-protein kinase pepkr2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33621: 130043-134797 , PASA_asmbl_33622: 130469-134797 , PASA_asmbl_33623: 130045-134789 , PASA_asmbl_33624: 130469-134789 , PASA_asmbl_33626: 133348-133690
cDNA
(Sanger)
(ID:Location)		 053_K13.ab1: 130045-131199

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_110 0.0 - - calcium-dependent protein kinase [Hevea brasiliensis]
2 Hb_000431_010 0.0638552822 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
3 Hb_000240_090 0.0777772002 - - Rab5 [Hevea brasiliensis]
4 Hb_001014_040 0.0833718884 - - PREDICTED: uncharacterized protein LOC105647308 [Jatropha curcas]
5 Hb_006711_060 0.0876556082 - - Tubulin beta-1 chain [Morus notabilis]
6 Hb_000617_150 0.0906108876 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
7 Hb_002056_060 0.0910379925 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
8 Hb_000120_680 0.0910945413 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
9 Hb_007904_260 0.092297963 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
10 Hb_004738_040 0.0923906652 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
11 Hb_029866_020 0.092524415 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
12 Hb_002005_020 0.0962291763 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002687_110 0.096741351 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
14 Hb_001140_060 0.0969293096 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
15 Hb_000120_960 0.0976587729 - - isocitrate dehydrogenase, putative [Ricinus communis]
16 Hb_003551_050 0.1005868492 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
17 Hb_012505_010 0.1013585541 - - mak, putative [Ricinus communis]
18 Hb_000753_130 0.1019887003 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
19 Hb_002769_050 0.1024774247 - - PREDICTED: endophilin-A1 [Jatropha curcas]
20 Hb_003053_020 0.1026399147 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_031862_110 Hb_031862_110 Hb_000431_010 Hb_000431_010 Hb_031862_110--Hb_000431_010 Hb_000240_090 Hb_000240_090 Hb_031862_110--Hb_000240_090 Hb_001014_040 Hb_001014_040 Hb_031862_110--Hb_001014_040 Hb_006711_060 Hb_006711_060 Hb_031862_110--Hb_006711_060 Hb_000617_150 Hb_000617_150 Hb_031862_110--Hb_000617_150 Hb_002056_060 Hb_002056_060 Hb_031862_110--Hb_002056_060 Hb_002687_110 Hb_002687_110 Hb_000431_010--Hb_002687_110 Hb_009486_130 Hb_009486_130 Hb_000431_010--Hb_009486_130 Hb_008300_010 Hb_008300_010 Hb_000431_010--Hb_008300_010 Hb_001277_330 Hb_001277_330 Hb_000431_010--Hb_001277_330 Hb_001140_060 Hb_001140_060 Hb_000431_010--Hb_001140_060 Hb_000120_680 Hb_000120_680 Hb_000240_090--Hb_000120_680 Hb_004635_100 Hb_004635_100 Hb_000240_090--Hb_004635_100 Hb_129204_030 Hb_129204_030 Hb_000240_090--Hb_129204_030 Hb_000347_410 Hb_000347_410 Hb_000240_090--Hb_000347_410 Hb_029866_020 Hb_029866_020 Hb_000240_090--Hb_029866_020 Hb_021409_030 Hb_021409_030 Hb_000240_090--Hb_021409_030 Hb_000108_070 Hb_000108_070 Hb_001014_040--Hb_000108_070 Hb_001811_030 Hb_001811_030 Hb_001014_040--Hb_001811_030 Hb_002005_020 Hb_002005_020 Hb_001014_040--Hb_002005_020 Hb_002374_100 Hb_002374_100 Hb_001014_040--Hb_002374_100 Hb_000130_050 Hb_000130_050 Hb_001014_040--Hb_000130_050 Hb_003540_030 Hb_003540_030 Hb_006711_060--Hb_003540_030 Hb_000120_960 Hb_000120_960 Hb_006711_060--Hb_000120_960 Hb_006711_060--Hb_001014_040 Hb_007904_260 Hb_007904_260 Hb_006711_060--Hb_007904_260 Hb_004738_040 Hb_004738_040 Hb_006711_060--Hb_004738_040 Hb_000617_150--Hb_000120_680 Hb_001699_130 Hb_001699_130 Hb_000617_150--Hb_001699_130 Hb_172932_010 Hb_172932_010 Hb_000617_150--Hb_172932_010 Hb_011534_030 Hb_011534_030 Hb_000617_150--Hb_011534_030 Hb_001454_190 Hb_001454_190 Hb_000617_150--Hb_001454_190 Hb_008695_100 Hb_008695_100 Hb_000617_150--Hb_008695_100 Hb_004993_050 Hb_004993_050 Hb_002056_060--Hb_004993_050 Hb_007943_090 Hb_007943_090 Hb_002056_060--Hb_007943_090 Hb_000125_030 Hb_000125_030 Hb_002056_060--Hb_000125_030 Hb_000072_080 Hb_000072_080 Hb_002056_060--Hb_000072_080 Hb_002056_060--Hb_000120_680 Hb_005431_010 Hb_005431_010 Hb_002056_060--Hb_005431_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.4215 13.7758 23.8399 23.9462 30.9849 35.9292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.2616 71.8113 108.333 31.627 24.2426

CAGE analysis