Hb_031862_130

Information

Type -
Description -
Location Contig31862: 157549-160513
Sequence    

Annotation

kegg
ID rcu:RCOM_0884580
description transcription factor, putative
nr
ID XP_002522619.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9FY69
description Transcription factor bHLH143 OS=Arabidopsis thaliana GN=BHLH143 PE=2 SV=1
trembl
ID B9S9F0
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0884580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33628: 158529-158881 , PASA_asmbl_33629: 160208-161341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_130 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_000215_080 0.1192219876 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
3 Hb_000069_170 0.1226010229 transcription factor TF Family: ARF PREDICTED: auxin response factor 18 [Jatropha curcas]
4 Hb_008695_140 0.1263771027 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
5 Hb_000011_330 0.1337780783 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
6 Hb_000723_200 0.138080066 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
7 Hb_005542_060 0.1441384876 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_000092_010 0.1463152414 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646502 [Jatropha curcas]
9 Hb_004586_210 0.1491777541 - - transcription factor, putative [Ricinus communis]
10 Hb_001662_060 0.1517903539 - - SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein isoform 1 [Theobroma cacao]
11 Hb_000567_380 0.1547081931 - - ubiquitin specific protease 39 and snrnp assembly factor, putative [Ricinus communis]
12 Hb_007765_020 0.1594907966 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
13 Hb_005228_070 0.1597750946 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial [Jatropha curcas]
14 Hb_004785_140 0.1598888345 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
15 Hb_005285_020 0.1600804039 - - -
16 Hb_002205_190 0.1606917209 - - PREDICTED: U-box domain-containing protein 62-like [Jatropha curcas]
17 Hb_008159_010 0.1612792441 - - PREDICTED: 66 kDa stress protein [Jatropha curcas]
18 Hb_027393_030 0.1638501092 - - PREDICTED: uncharacterized protein At5g39865 [Jatropha curcas]
19 Hb_000549_040 0.1644270825 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
20 Hb_001946_410 0.1664823012 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_031862_130 Hb_031862_130 Hb_000215_080 Hb_000215_080 Hb_031862_130--Hb_000215_080 Hb_000069_170 Hb_000069_170 Hb_031862_130--Hb_000069_170 Hb_008695_140 Hb_008695_140 Hb_031862_130--Hb_008695_140 Hb_000011_330 Hb_000011_330 Hb_031862_130--Hb_000011_330 Hb_000723_200 Hb_000723_200 Hb_031862_130--Hb_000723_200 Hb_005542_060 Hb_005542_060 Hb_031862_130--Hb_005542_060 Hb_000215_080--Hb_008695_140 Hb_001946_410 Hb_001946_410 Hb_000215_080--Hb_001946_410 Hb_005285_020 Hb_005285_020 Hb_000215_080--Hb_005285_020 Hb_000215_080--Hb_005542_060 Hb_000215_080--Hb_000069_170 Hb_002194_090 Hb_002194_090 Hb_000069_170--Hb_002194_090 Hb_001662_060 Hb_001662_060 Hb_000069_170--Hb_001662_060 Hb_007765_020 Hb_007765_020 Hb_000069_170--Hb_007765_020 Hb_000069_170--Hb_008695_140 Hb_000567_380 Hb_000567_380 Hb_008695_140--Hb_000567_380 Hb_002205_190 Hb_002205_190 Hb_008695_140--Hb_002205_190 Hb_008695_140--Hb_007765_020 Hb_008695_140--Hb_000011_330 Hb_008695_140--Hb_001946_410 Hb_004785_140 Hb_004785_140 Hb_008695_140--Hb_004785_140 Hb_000011_330--Hb_000567_380 Hb_000011_330--Hb_002205_190 Hb_003976_030 Hb_003976_030 Hb_000011_330--Hb_003976_030 Hb_000092_010 Hb_000092_010 Hb_000011_330--Hb_000092_010 Hb_000723_130 Hb_000723_130 Hb_000011_330--Hb_000723_130 Hb_046198_010 Hb_046198_010 Hb_000011_330--Hb_046198_010 Hb_000723_200--Hb_003976_030 Hb_000571_110 Hb_000571_110 Hb_000723_200--Hb_000571_110 Hb_000723_200--Hb_000092_010 Hb_000723_200--Hb_000723_130 Hb_006017_010 Hb_006017_010 Hb_000723_200--Hb_006017_010 Hb_004204_170 Hb_004204_170 Hb_000723_200--Hb_004204_170 Hb_005542_060--Hb_004785_140 Hb_027393_030 Hb_027393_030 Hb_005542_060--Hb_027393_030 Hb_002205_130 Hb_002205_130 Hb_005542_060--Hb_002205_130 Hb_011030_020 Hb_011030_020 Hb_005542_060--Hb_011030_020 Hb_000239_020 Hb_000239_020 Hb_005542_060--Hb_000239_020 Hb_000748_130 Hb_000748_130 Hb_005542_060--Hb_000748_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9893 16.9958 16.5889 19.5972 9.4536 17.1284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.56499 10.1015 56.8237 9.60976 9.31423

CAGE analysis