Hb_031862_170

Information

Type -
Description -
Location Contig31862: 196217-198405
Sequence    

Annotation

kegg
ID rcu:RCOM_0884730
description immunophilin, putative (EC:5.2.1.8)
nr
ID XP_002522624.1
description immunophilin, putative [Ricinus communis]
swissprot
ID O04287
description Peptidyl-prolyl cis-trans isomerase FKBP12 OS=Vicia faba GN=FKBP12 PE=1 SV=1
trembl
ID B9S9F5
description Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_0884730 PE=4 SV=1
Gene Ontology
ID GO:0044237
description peptidyl-prolyl cis-trans isomerase fkbp12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33632: 197149-198176 , PASA_asmbl_33633: 197930-198275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_170 0.0 - - immunophilin, putative [Ricinus communis]
2 Hb_005568_070 0.1169370719 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
3 Hb_004102_130 0.12254761 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000156_030 0.1319176431 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000590_080 0.1411815384 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
6 Hb_003673_020 0.1426159304 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
7 Hb_004032_460 0.1440319918 - - -
8 Hb_060437_010 0.1442621762 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
9 Hb_000173_370 0.1453527303 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
10 Hb_004531_090 0.1461842296 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
11 Hb_002897_040 0.1483149089 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
12 Hb_000018_160 0.1503039686 - - nitrate transporter, putative [Ricinus communis]
13 Hb_000211_080 0.1535838004 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_000849_150 0.1541989558 - - hypothetical protein JCGZ_15099 [Jatropha curcas]
15 Hb_000365_350 0.1543479179 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
16 Hb_003540_140 0.1554408849 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
17 Hb_000779_040 0.155844913 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
18 Hb_000300_540 0.1565987188 - - PREDICTED: syntaxin-132 [Jatropha curcas]
19 Hb_000329_540 0.1568994962 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
20 Hb_172256_010 0.1569744364 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_031862_170 Hb_031862_170 Hb_005568_070 Hb_005568_070 Hb_031862_170--Hb_005568_070 Hb_004102_130 Hb_004102_130 Hb_031862_170--Hb_004102_130 Hb_000156_030 Hb_000156_030 Hb_031862_170--Hb_000156_030 Hb_000590_080 Hb_000590_080 Hb_031862_170--Hb_000590_080 Hb_003673_020 Hb_003673_020 Hb_031862_170--Hb_003673_020 Hb_004032_460 Hb_004032_460 Hb_031862_170--Hb_004032_460 Hb_000018_160 Hb_000018_160 Hb_005568_070--Hb_000018_160 Hb_000211_080 Hb_000211_080 Hb_005568_070--Hb_000211_080 Hb_000329_540 Hb_000329_540 Hb_005568_070--Hb_000329_540 Hb_005568_070--Hb_004102_130 Hb_003540_140 Hb_003540_140 Hb_005568_070--Hb_003540_140 Hb_172256_010 Hb_172256_010 Hb_004102_130--Hb_172256_010 Hb_000016_180 Hb_000016_180 Hb_004102_130--Hb_000016_180 Hb_004102_130--Hb_003673_020 Hb_004102_130--Hb_000211_080 Hb_004531_090 Hb_004531_090 Hb_004102_130--Hb_004531_090 Hb_000176_170 Hb_000176_170 Hb_004102_130--Hb_000176_170 Hb_000156_030--Hb_003540_140 Hb_000156_030--Hb_000329_540 Hb_000161_100 Hb_000161_100 Hb_000156_030--Hb_000161_100 Hb_000156_030--Hb_004032_460 Hb_000441_230 Hb_000441_230 Hb_000156_030--Hb_000441_230 Hb_002897_040 Hb_002897_040 Hb_000156_030--Hb_002897_040 Hb_003050_090 Hb_003050_090 Hb_000590_080--Hb_003050_090 Hb_060437_010 Hb_060437_010 Hb_000590_080--Hb_060437_010 Hb_004931_040 Hb_004931_040 Hb_000590_080--Hb_004931_040 Hb_001034_020 Hb_001034_020 Hb_000590_080--Hb_001034_020 Hb_000101_210 Hb_000101_210 Hb_000590_080--Hb_000101_210 Hb_035360_010 Hb_035360_010 Hb_003673_020--Hb_035360_010 Hb_000779_040 Hb_000779_040 Hb_003673_020--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_003673_020--Hb_000211_090 Hb_003673_020--Hb_000211_080 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_000088_180 Hb_000088_180 Hb_004032_460--Hb_000088_180 Hb_000173_370 Hb_000173_370 Hb_004032_460--Hb_000173_370 Hb_000300_540 Hb_000300_540 Hb_004032_460--Hb_000300_540 Hb_000365_350 Hb_000365_350 Hb_004032_460--Hb_000365_350 Hb_000849_150 Hb_000849_150 Hb_004032_460--Hb_000849_150 Hb_000363_340 Hb_000363_340 Hb_004032_460--Hb_000363_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.4289 3.28701 1.49793 2.46291 34.5486 23.4878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.9312 2.85595 7.13698 3.84098 0.525763

CAGE analysis