Hb_031862_220

Information

Type -
Description -
Location Contig31862: 216842-217369
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa007276mg
description hypothetical protein
nr
ID XP_012079589.1
description PREDICTED: cyclin-D4-1-like [Jatropha curcas]
swissprot
ID Q58FX0
description BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1
trembl
ID A0A067KJT1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12550 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33641: 216760-217517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031862_220 0.0 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
2 Hb_001049_130 0.0141748031 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
3 Hb_001053_070 0.0169338546 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
4 Hb_000373_210 0.0275863688 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
5 Hb_001936_100 0.0438013812 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000987_030 0.0462283376 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
7 Hb_000251_150 0.0506605927 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
8 Hb_002400_200 0.0545697454 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
9 Hb_180007_010 0.0557379697 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
10 Hb_002374_480 0.0564251835 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_029879_020 0.0578587841 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
12 Hb_001348_160 0.0594923169 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
13 Hb_000979_120 0.0598768666 - - Pectinesterase-1 precursor, putative [Ricinus communis]
14 Hb_004452_070 0.0615152018 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
15 Hb_007317_030 0.0636182425 - - -
16 Hb_003186_030 0.0654153763 transcription factor TF Family: MYB hypothetical protein POPTR_0012s05720g [Populus trichocarpa]
17 Hb_005743_050 0.0654293407 - - unnamed protein product [Coffea canephora]
18 Hb_153106_010 0.0688504951 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
19 Hb_154064_010 0.0715791043 - - PREDICTED: uncharacterized protein LOC105780682 [Gossypium raimondii]
20 Hb_000940_060 0.0720034646 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]

Gene co-expression network

sample Hb_031862_220 Hb_031862_220 Hb_001049_130 Hb_001049_130 Hb_031862_220--Hb_001049_130 Hb_001053_070 Hb_001053_070 Hb_031862_220--Hb_001053_070 Hb_000373_210 Hb_000373_210 Hb_031862_220--Hb_000373_210 Hb_001936_100 Hb_001936_100 Hb_031862_220--Hb_001936_100 Hb_000987_030 Hb_000987_030 Hb_031862_220--Hb_000987_030 Hb_000251_150 Hb_000251_150 Hb_031862_220--Hb_000251_150 Hb_001049_130--Hb_001053_070 Hb_001049_130--Hb_000373_210 Hb_001049_130--Hb_001936_100 Hb_001049_130--Hb_000987_030 Hb_002400_200 Hb_002400_200 Hb_001049_130--Hb_002400_200 Hb_001053_070--Hb_000373_210 Hb_001053_070--Hb_001936_100 Hb_001053_070--Hb_002400_200 Hb_001053_070--Hb_000987_030 Hb_002374_480 Hb_002374_480 Hb_000373_210--Hb_002374_480 Hb_180007_010 Hb_180007_010 Hb_000373_210--Hb_180007_010 Hb_000373_210--Hb_001936_100 Hb_001936_100--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_001936_100--Hb_000703_340 Hb_005743_050 Hb_005743_050 Hb_000987_030--Hb_005743_050 Hb_000987_030--Hb_000251_150 Hb_158001_010 Hb_158001_010 Hb_000987_030--Hb_158001_010 Hb_000979_120 Hb_000979_120 Hb_000987_030--Hb_000979_120 Hb_000046_400 Hb_000046_400 Hb_000251_150--Hb_000046_400 Hb_000251_150--Hb_005743_050 Hb_029879_020 Hb_029879_020 Hb_000251_150--Hb_029879_020 Hb_000179_010 Hb_000179_010 Hb_000251_150--Hb_000179_010 Hb_004452_070 Hb_004452_070 Hb_000251_150--Hb_004452_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.96215 1.82666 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 7.85263

CAGE analysis