Hb_031866_030

Information

Type -
Description -
Location Contig31866: 26322-27686
Sequence    

Annotation

kegg
ID cmo:103491153
description serine/threonine-protein phosphatase 7 long form homolog
nr
ID XP_008449202.1
description PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
swissprot
ID -
description -
trembl
ID A5B5G3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019818 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031866_030 0.0 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
2 Hb_002060_040 0.013861916 - - putative polyprotein [Oryza sativa Japonica Group]
3 Hb_033066_030 0.0146210402 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
4 Hb_009152_030 0.0431576651 - - hypothetical protein L484_026849 [Morus notabilis]
5 Hb_000009_010 0.1032513521 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
6 Hb_001629_040 0.1369405002 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
7 Hb_000789_140 0.1632604176 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
8 Hb_003567_020 0.1935742209 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000155_240 0.2069059595 - - PREDICTED: uncharacterized protein LOC104888642 [Beta vulgaris subsp. vulgaris]
10 Hb_128193_010 0.2173698238 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
11 Hb_006474_010 0.2312840305 - - hypothetical protein VITISV_032357 [Vitis vinifera]
12 Hb_180367_010 0.2327182253 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
13 Hb_003739_040 0.2351859991 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
14 Hb_017604_030 0.2416974879 - - -
15 Hb_038508_010 0.2449410507 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
16 Hb_121041_010 0.2470091289 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
17 Hb_000089_050 0.2614155171 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000143_070 0.2687714094 - - -
19 Hb_000300_460 0.2687758392 - - Mavicyanin, putative [Ricinus communis]
20 Hb_003279_010 0.268833148 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_031866_030 Hb_031866_030 Hb_002060_040 Hb_002060_040 Hb_031866_030--Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_031866_030--Hb_033066_030 Hb_009152_030 Hb_009152_030 Hb_031866_030--Hb_009152_030 Hb_000009_010 Hb_000009_010 Hb_031866_030--Hb_000009_010 Hb_001629_040 Hb_001629_040 Hb_031866_030--Hb_001629_040 Hb_000789_140 Hb_000789_140 Hb_031866_030--Hb_000789_140 Hb_002060_040--Hb_033066_030 Hb_002060_040--Hb_009152_030 Hb_002060_040--Hb_000009_010 Hb_002060_040--Hb_001629_040 Hb_002060_040--Hb_000789_140 Hb_033066_030--Hb_009152_030 Hb_033066_030--Hb_000009_010 Hb_033066_030--Hb_001629_040 Hb_033066_030--Hb_000789_140 Hb_009152_030--Hb_000009_010 Hb_009152_030--Hb_000789_140 Hb_009152_030--Hb_001629_040 Hb_000009_010--Hb_001629_040 Hb_128193_010 Hb_128193_010 Hb_000009_010--Hb_128193_010 Hb_001629_040--Hb_128193_010 Hb_000155_240 Hb_000155_240 Hb_000789_140--Hb_000155_240 Hb_038508_010 Hb_038508_010 Hb_000789_140--Hb_038508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0311028 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0228374 0.112555

CAGE analysis