Hb_031866_050

Information

Type -
Description -
Location Contig31866: 29413-30602
Sequence    

Annotation

kegg
ID sita:101756357
description uncharacterized LOC101756357
nr
ID XP_012704358.1
description PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
swissprot
ID -
description -
trembl
ID M0XWQ7
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0008168
description rrna methyltransferase ylbh

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33646: 14393-36694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031866_050 0.0 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
2 Hb_007447_020 0.1236648413 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
3 Hb_003030_040 0.134967947 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
4 Hb_003656_150 0.1576540906 - - -
5 Hb_007188_030 0.1637416142 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
6 Hb_000683_090 0.1687264979 - - stress enhanced protein [Medicago truncatula]
7 Hb_177103_010 0.1693284642 - - PREDICTED: histone H2AX [Elaeis guineensis]
8 Hb_169170_010 0.1713584137 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
9 Hb_005318_020 0.1769030223 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
10 Hb_002815_050 0.1775633647 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
11 Hb_000084_130 0.1797958826 - - -
12 Hb_006995_010 0.1807451603 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
13 Hb_008096_020 0.181311461 - - -
14 Hb_005679_070 0.1892423162 - - hypothetical protein M569_07741, partial [Genlisea aurea]
15 Hb_006198_090 0.1931582732 - - PREDICTED: vesicle-associated membrane protein 721-like isoform X2 [Tarenaya hassleriana]
16 Hb_002078_500 0.201598854 - - conserved hypothetical protein [Ricinus communis]
17 Hb_068014_010 0.2026454884 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
18 Hb_000810_020 0.2039728649 - - -
19 Hb_001231_070 0.2068837227 - - -
20 Hb_006663_090 0.2074247211 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_031866_050 Hb_031866_050 Hb_007447_020 Hb_007447_020 Hb_031866_050--Hb_007447_020 Hb_003030_040 Hb_003030_040 Hb_031866_050--Hb_003030_040 Hb_003656_150 Hb_003656_150 Hb_031866_050--Hb_003656_150 Hb_007188_030 Hb_007188_030 Hb_031866_050--Hb_007188_030 Hb_000683_090 Hb_000683_090 Hb_031866_050--Hb_000683_090 Hb_177103_010 Hb_177103_010 Hb_031866_050--Hb_177103_010 Hb_007447_020--Hb_000683_090 Hb_005318_020 Hb_005318_020 Hb_007447_020--Hb_005318_020 Hb_169170_010 Hb_169170_010 Hb_007447_020--Hb_169170_010 Hb_122567_020 Hb_122567_020 Hb_007447_020--Hb_122567_020 Hb_079978_010 Hb_079978_010 Hb_007447_020--Hb_079978_010 Hb_002815_050 Hb_002815_050 Hb_003030_040--Hb_002815_050 Hb_003030_040--Hb_007188_030 Hb_003030_040--Hb_003656_150 Hb_005107_020 Hb_005107_020 Hb_003030_040--Hb_005107_020 Hb_005679_070 Hb_005679_070 Hb_003030_040--Hb_005679_070 Hb_006995_010 Hb_006995_010 Hb_003656_150--Hb_006995_010 Hb_003656_150--Hb_007188_030 Hb_012675_080 Hb_012675_080 Hb_003656_150--Hb_012675_080 Hb_006198_090 Hb_006198_090 Hb_003656_150--Hb_006198_090 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_007188_030--Hb_002815_050 Hb_007188_030--Hb_006198_090 Hb_007188_030--Hb_177103_010 Hb_007188_030--Hb_005679_070 Hb_000683_090--Hb_005318_020 Hb_008096_020 Hb_008096_020 Hb_000683_090--Hb_008096_020 Hb_001222_040 Hb_001222_040 Hb_000683_090--Hb_001222_040 Hb_000683_090--Hb_169170_010 Hb_177103_010--Hb_169170_010 Hb_177103_010--Hb_006198_090 Hb_177103_010--Hb_003656_150 Hb_177103_010--Hb_005679_070 Hb_068014_010 Hb_068014_010 Hb_177103_010--Hb_068014_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.35745 0.815454 0.806346 16.1472 1.97249 35.3539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.0774 2.02789 1.6172 0.948021 4.64554

CAGE analysis