Hb_031866_060

Information

Type -
Description -
Location Contig31866: 34546-36769
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34860g
description POPTRDRAFT_829723; hypothetical protein
nr
ID XP_012082597.1
description PREDICTED: uncharacterized protein LOC105642381 isoform X2 [Jatropha curcas]
swissprot
ID O34331
description Putative rRNA methyltransferase YlbH OS=Bacillus subtilis (strain 168) GN=ylbH PE=3 SV=2
trembl
ID A0A067LAK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09686 PE=4 SV=1
Gene Ontology
ID GO:0008168
description rrna methyltransferase ylbh

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33646: 14393-36694
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031866_060 0.0 - - PREDICTED: uncharacterized protein LOC105642381 isoform X2 [Jatropha curcas]
2 Hb_002374_050 0.1182831721 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
3 Hb_004934_070 0.1195865774 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
4 Hb_006663_070 0.1200900607 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
5 Hb_005862_010 0.121215831 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
6 Hb_010381_120 0.1215763669 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
7 Hb_007741_020 0.1220946086 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
8 Hb_137403_010 0.1261638402 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
9 Hb_000679_150 0.1272169708 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
10 Hb_003656_140 0.1281935813 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
11 Hb_002054_040 0.1282868179 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
12 Hb_000031_220 0.1295572167 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
13 Hb_002023_020 0.1298351244 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
14 Hb_000364_080 0.1306210991 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
15 Hb_000046_440 0.1322266781 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
16 Hb_006114_030 0.1337435123 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
17 Hb_000364_060 0.1341650747 - - JHL03K20.4 [Jatropha curcas]
18 Hb_002784_060 0.1357460515 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
19 Hb_000160_220 0.1364484147 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
20 Hb_000212_240 0.1370474263 - - short-chain dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_031866_060 Hb_031866_060 Hb_002374_050 Hb_002374_050 Hb_031866_060--Hb_002374_050 Hb_004934_070 Hb_004934_070 Hb_031866_060--Hb_004934_070 Hb_006663_070 Hb_006663_070 Hb_031866_060--Hb_006663_070 Hb_005862_010 Hb_005862_010 Hb_031866_060--Hb_005862_010 Hb_010381_120 Hb_010381_120 Hb_031866_060--Hb_010381_120 Hb_007741_020 Hb_007741_020 Hb_031866_060--Hb_007741_020 Hb_006114_030 Hb_006114_030 Hb_002374_050--Hb_006114_030 Hb_002054_040 Hb_002054_040 Hb_002374_050--Hb_002054_040 Hb_000260_220 Hb_000260_220 Hb_002374_050--Hb_000260_220 Hb_004689_050 Hb_004689_050 Hb_002374_050--Hb_004689_050 Hb_001124_160 Hb_001124_160 Hb_002374_050--Hb_001124_160 Hb_100215_010 Hb_100215_010 Hb_002374_050--Hb_100215_010 Hb_004934_070--Hb_005862_010 Hb_000785_080 Hb_000785_080 Hb_004934_070--Hb_000785_080 Hb_002374_020 Hb_002374_020 Hb_004934_070--Hb_002374_020 Hb_003641_060 Hb_003641_060 Hb_004934_070--Hb_003641_060 Hb_004881_020 Hb_004881_020 Hb_004934_070--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_004934_070--Hb_144598_030 Hb_000679_150 Hb_000679_150 Hb_006663_070--Hb_000679_150 Hb_002601_130 Hb_002601_130 Hb_006663_070--Hb_002601_130 Hb_002092_090 Hb_002092_090 Hb_006663_070--Hb_002092_090 Hb_004619_050 Hb_004619_050 Hb_006663_070--Hb_004619_050 Hb_032458_010 Hb_032458_010 Hb_006663_070--Hb_032458_010 Hb_005679_050 Hb_005679_050 Hb_006663_070--Hb_005679_050 Hb_000494_040 Hb_000494_040 Hb_005862_010--Hb_000494_040 Hb_005862_010--Hb_144598_030 Hb_004072_020 Hb_004072_020 Hb_005862_010--Hb_004072_020 Hb_003912_090 Hb_003912_090 Hb_005862_010--Hb_003912_090 Hb_137403_010 Hb_137403_010 Hb_005862_010--Hb_137403_010 Hb_010381_120--Hb_000494_040 Hb_001689_020 Hb_001689_020 Hb_010381_120--Hb_001689_020 Hb_002107_160 Hb_002107_160 Hb_010381_120--Hb_002107_160 Hb_010381_120--Hb_005862_010 Hb_002529_060 Hb_002529_060 Hb_010381_120--Hb_002529_060 Hb_005016_170 Hb_005016_170 Hb_010381_120--Hb_005016_170 Hb_000567_050 Hb_000567_050 Hb_007741_020--Hb_000567_050 Hb_000077_090 Hb_000077_090 Hb_007741_020--Hb_000077_090 Hb_000212_240 Hb_000212_240 Hb_007741_020--Hb_000212_240 Hb_007741_020--Hb_002054_040 Hb_007741_020--Hb_002374_050 Hb_002784_060 Hb_002784_060 Hb_007741_020--Hb_002784_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.03557 3.44469 4.31175 5.21196 6.42381 21.0578
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3801 2.43509 4.89422 4.93682 4.7504

CAGE analysis