Hb_031910_020

Information

Type -
Description -
Location Contig31910: 18706-22298
Sequence    

Annotation

kegg
ID rcu:RCOM_1105750
description sec15, putative
nr
ID XP_012087818.1
description PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
swissprot
ID Q9LXX6
description Exocyst complex component SEC15A OS=Arabidopsis thaliana GN=SEC15A PE=3 SV=2
trembl
ID A0A067JX45
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26524 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec15a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33654: 18837-22271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031910_020 0.0 - - PREDICTED: exocyst complex component SEC15A [Jatropha curcas]
2 Hb_004993_060 0.0719339585 - - -
3 Hb_000603_080 0.0781695375 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170 [Vitis vinifera]
4 Hb_001314_070 0.0831727002 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000549_040 0.0841020366 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
6 Hb_001504_330 0.0880205581 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
7 Hb_002799_040 0.0933709995 - - PREDICTED: probable 26S proteasome non-ATPase regulatory subunit 3 [Vitis vinifera]
8 Hb_000367_260 0.0957005131 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
9 Hb_004117_260 0.1026025211 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000393_020 0.1035999622 - - lipid binding protein, putative [Ricinus communis]
11 Hb_010344_050 0.1064968751 - - Adagio 1 -like protein [Gossypium arboreum]
12 Hb_004429_020 0.1066867571 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
13 Hb_000327_180 0.1093316783 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
14 Hb_007416_060 0.1099052262 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
15 Hb_027472_070 0.1116314159 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
16 Hb_000497_300 0.1120334048 - - peroxisomal membrane protein [Hevea brasiliensis]
17 Hb_001507_040 0.1120647111 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003847_030 0.1120684877 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]
19 Hb_001352_020 0.1121025184 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Jatropha curcas]
20 Hb_001635_190 0.1121098989 - - RNA m5u methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_031910_020 Hb_031910_020 Hb_004993_060 Hb_004993_060 Hb_031910_020--Hb_004993_060 Hb_000603_080 Hb_000603_080 Hb_031910_020--Hb_000603_080 Hb_001314_070 Hb_001314_070 Hb_031910_020--Hb_001314_070 Hb_000549_040 Hb_000549_040 Hb_031910_020--Hb_000549_040 Hb_001504_330 Hb_001504_330 Hb_031910_020--Hb_001504_330 Hb_002799_040 Hb_002799_040 Hb_031910_020--Hb_002799_040 Hb_004993_060--Hb_000549_040 Hb_007044_050 Hb_007044_050 Hb_004993_060--Hb_007044_050 Hb_004993_060--Hb_000603_080 Hb_023771_010 Hb_023771_010 Hb_004993_060--Hb_023771_010 Hb_000152_320 Hb_000152_320 Hb_004993_060--Hb_000152_320 Hb_009803_050 Hb_009803_050 Hb_000603_080--Hb_009803_050 Hb_000603_080--Hb_001314_070 Hb_005488_200 Hb_005488_200 Hb_000603_080--Hb_005488_200 Hb_000603_080--Hb_001504_330 Hb_000982_080 Hb_000982_080 Hb_000603_080--Hb_000982_080 Hb_003994_260 Hb_003994_260 Hb_000603_080--Hb_003994_260 Hb_000393_020 Hb_000393_020 Hb_001314_070--Hb_000393_020 Hb_000250_060 Hb_000250_060 Hb_001314_070--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001314_070--Hb_010812_120 Hb_000483_260 Hb_000483_260 Hb_001314_070--Hb_000483_260 Hb_004117_260 Hb_004117_260 Hb_001314_070--Hb_004117_260 Hb_000549_040--Hb_004117_260 Hb_000367_260 Hb_000367_260 Hb_000549_040--Hb_000367_260 Hb_000549_040--Hb_001314_070 Hb_005228_070 Hb_005228_070 Hb_000549_040--Hb_005228_070 Hb_001504_330--Hb_002799_040 Hb_000007_140 Hb_000007_140 Hb_001504_330--Hb_000007_140 Hb_001504_330--Hb_000367_260 Hb_003360_040 Hb_003360_040 Hb_001504_330--Hb_003360_040 Hb_002799_040--Hb_000393_020 Hb_002119_130 Hb_002119_130 Hb_002799_040--Hb_002119_130 Hb_001507_040 Hb_001507_040 Hb_002799_040--Hb_001507_040 Hb_002799_040--Hb_000603_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.05622 10.1636 7.85228 8.2729 4.30177 5.57724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.77286 13.2875 20.9791 12.4959 10.6591

CAGE analysis