Hb_031964_010

Information

Type -
Description -
Location Contig31964: 6-434
Sequence    

Annotation

kegg
ID vvi:100262220
description probable leucine-rich repeat receptor-like protein kinase At1g35710
nr
ID XP_010656627.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
swissprot
ID P0DL10
description Leucine-rich repeat receptor-like kinase protein THICK TASSEL DWARF1 OS=Zea mays GN=TD1 PE=2 SV=1
trembl
ID A0A067D6Z1
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0381872mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable leucine-rich repeat receptor-like protein kinase at1g35710

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031964_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
2 Hb_000493_110 0.0035475272 - - hypothetical protein EUGRSUZ_A02264 [Eucalyptus grandis]
3 Hb_004400_050 0.0282415503 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
4 Hb_003766_020 0.0291805034 - - PREDICTED: uncharacterized protein LOC105648182 [Jatropha curcas]
5 Hb_000482_100 0.0336982246 - - -
6 Hb_185467_040 0.0350108266 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
7 Hb_004553_010 0.0351154936 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana tomentosiformis]
8 Hb_160879_010 0.0388818715 - - PREDICTED: uncharacterized protein LOC105629277 [Jatropha curcas]
9 Hb_189099_010 0.0408869482 - - PREDICTED: uncharacterized protein At1g04910-like [Citrus sinensis]
10 Hb_127835_030 0.0478834645 - - -
11 Hb_001629_070 0.0498440147 transcription factor TF Family: ULT Protein ULTRAPETALA2, putative [Ricinus communis]
12 Hb_068578_010 0.0501029036 - - PREDICTED: uncharacterized protein LOC105789577 [Gossypium raimondii]
13 Hb_002982_060 0.0541453491 - - hypothetical protein JCGZ_19604 [Jatropha curcas]
14 Hb_009813_040 0.0605179626 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
15 Hb_099586_010 0.0617822413 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
16 Hb_000001_030 0.0642959127 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_002656_040 0.0645224679 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
18 Hb_084299_010 0.0647647791 - - PREDICTED: uncharacterized protein LOC104233139 [Nicotiana sylvestris]
19 Hb_008269_020 0.06535738 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000118_050 0.0654246833 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_031964_010 Hb_031964_010 Hb_000493_110 Hb_000493_110 Hb_031964_010--Hb_000493_110 Hb_004400_050 Hb_004400_050 Hb_031964_010--Hb_004400_050 Hb_003766_020 Hb_003766_020 Hb_031964_010--Hb_003766_020 Hb_000482_100 Hb_000482_100 Hb_031964_010--Hb_000482_100 Hb_185467_040 Hb_185467_040 Hb_031964_010--Hb_185467_040 Hb_004553_010 Hb_004553_010 Hb_031964_010--Hb_004553_010 Hb_000493_110--Hb_004400_050 Hb_000493_110--Hb_003766_020 Hb_000493_110--Hb_185467_040 Hb_000493_110--Hb_004553_010 Hb_160879_010 Hb_160879_010 Hb_000493_110--Hb_160879_010 Hb_004400_050--Hb_003766_020 Hb_004400_050--Hb_185467_040 Hb_004400_050--Hb_004553_010 Hb_004400_050--Hb_160879_010 Hb_127835_030 Hb_127835_030 Hb_004400_050--Hb_127835_030 Hb_003766_020--Hb_185467_040 Hb_003766_020--Hb_004553_010 Hb_003766_020--Hb_160879_010 Hb_003766_020--Hb_127835_030 Hb_189099_010 Hb_189099_010 Hb_000482_100--Hb_189099_010 Hb_001629_070 Hb_001629_070 Hb_000482_100--Hb_001629_070 Hb_068578_010 Hb_068578_010 Hb_000482_100--Hb_068578_010 Hb_002982_060 Hb_002982_060 Hb_000482_100--Hb_002982_060 Hb_009813_040 Hb_009813_040 Hb_000482_100--Hb_009813_040 Hb_099586_010 Hb_099586_010 Hb_000482_100--Hb_099586_010 Hb_185467_040--Hb_004553_010 Hb_185467_040--Hb_160879_010 Hb_185467_040--Hb_127835_030 Hb_001383_040 Hb_001383_040 Hb_185467_040--Hb_001383_040 Hb_004553_010--Hb_160879_010 Hb_004553_010--Hb_127835_030 Hb_004553_010--Hb_001383_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.210305 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.5665

CAGE analysis