Hb_031984_020

Information

Type -
Description -
Location Contig31984: 7798-10564
Sequence    

Annotation

kegg
ID rcu:RCOM_1652480
description hypothetical protein
nr
ID XP_002516629.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P42730
description Chaperone protein ClpB1 OS=Arabidopsis thaliana GN=CLPB1 PE=1 SV=2
trembl
ID B9RSB0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1652480 PE=4 SV=1
Gene Ontology
ID GO:0019538
description double clp-n motif-containing p-loop nucleoside triphosphate hydrolases superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33672: 7742-8329 , PASA_asmbl_33674: 9049-9496 , PASA_asmbl_33675: 9535-9819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031984_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002471_130 0.0422863228 - - PREDICTED: probable transmembrane ascorbate ferrireductase 3 [Jatropha curcas]
3 Hb_132381_010 0.0756518871 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_009151_010 0.0850150487 - - Peroxidase 3 [Morus notabilis]
5 Hb_007113_060 0.0884882332 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
6 Hb_006922_120 0.0891538558 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
7 Hb_053264_010 0.089943321 - - beta glucosidase [Hevea brasiliensis]
8 Hb_004162_200 0.092223876 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
9 Hb_002311_030 0.0957649424 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000103_450 0.0962232719 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
11 Hb_000903_040 0.1016325489 - - PREDICTED: pirin-like protein [Jatropha curcas]
12 Hb_005116_150 0.1021535758 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
13 Hb_006846_040 0.1031422224 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
14 Hb_005440_040 0.1037228585 - - PREDICTED: microtubule-associated protein 70-5 [Jatropha curcas]
15 Hb_009783_010 0.1047372978 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
16 Hb_013749_040 0.1060550318 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
17 Hb_010883_170 0.1060579281 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
18 Hb_000057_090 0.1068879897 - - hypothetical protein RCOM_1494490 [Ricinus communis]
19 Hb_000531_030 0.1072597548 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000140_320 0.107381766 - - delta-8 sphingolipid desaturase [Vernicia fordii]

Gene co-expression network

sample Hb_031984_020 Hb_031984_020 Hb_002471_130 Hb_002471_130 Hb_031984_020--Hb_002471_130 Hb_132381_010 Hb_132381_010 Hb_031984_020--Hb_132381_010 Hb_009151_010 Hb_009151_010 Hb_031984_020--Hb_009151_010 Hb_007113_060 Hb_007113_060 Hb_031984_020--Hb_007113_060 Hb_006922_120 Hb_006922_120 Hb_031984_020--Hb_006922_120 Hb_053264_010 Hb_053264_010 Hb_031984_020--Hb_053264_010 Hb_002471_130--Hb_009151_010 Hb_000103_450 Hb_000103_450 Hb_002471_130--Hb_000103_450 Hb_002471_130--Hb_053264_010 Hb_009783_010 Hb_009783_010 Hb_002471_130--Hb_009783_010 Hb_002471_130--Hb_006922_120 Hb_015175_070 Hb_015175_070 Hb_132381_010--Hb_015175_070 Hb_000531_030 Hb_000531_030 Hb_132381_010--Hb_000531_030 Hb_132381_010--Hb_002471_130 Hb_005295_030 Hb_005295_030 Hb_132381_010--Hb_005295_030 Hb_004899_230 Hb_004899_230 Hb_132381_010--Hb_004899_230 Hb_002311_030 Hb_002311_030 Hb_009151_010--Hb_002311_030 Hb_004162_200 Hb_004162_200 Hb_009151_010--Hb_004162_200 Hb_005116_150 Hb_005116_150 Hb_009151_010--Hb_005116_150 Hb_002067_070 Hb_002067_070 Hb_009151_010--Hb_002067_070 Hb_009151_010--Hb_007113_060 Hb_009151_010--Hb_000531_030 Hb_007113_060--Hb_006922_120 Hb_000816_140 Hb_000816_140 Hb_007113_060--Hb_000816_140 Hb_005440_040 Hb_005440_040 Hb_007113_060--Hb_005440_040 Hb_007113_060--Hb_002311_030 Hb_007113_060--Hb_004162_200 Hb_162450_010 Hb_162450_010 Hb_007113_060--Hb_162450_010 Hb_006977_010 Hb_006977_010 Hb_006922_120--Hb_006977_010 Hb_013749_040 Hb_013749_040 Hb_006922_120--Hb_013749_040 Hb_006922_120--Hb_000816_140 Hb_006922_120--Hb_005440_040 Hb_010883_170 Hb_010883_170 Hb_006922_120--Hb_010883_170 Hb_000903_040 Hb_000903_040 Hb_053264_010--Hb_000903_040 Hb_006846_040 Hb_006846_040 Hb_053264_010--Hb_006846_040 Hb_053264_010--Hb_000103_450 Hb_010962_020 Hb_010962_020 Hb_053264_010--Hb_010962_020 Hb_000003_280 Hb_000003_280 Hb_053264_010--Hb_000003_280 Hb_001047_090 Hb_001047_090 Hb_053264_010--Hb_001047_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.048694 0.564327 1.79089 0.0283481 0.0137232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0322107 0.747709

CAGE analysis