Hb_032011_020

Information

Type -
Description -
Location Contig32011: 16719-18318
Sequence    

Annotation

kegg
ID rcu:RCOM_0906600
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID AEQ27768.1
description alpha-farnesene synthase [Ricinus communis]
swissprot
ID B9RXW0
description Alpha-farnesene synthase OS=Ricinus communis GN=TPS7 PE=1 SV=2
trembl
ID F8TWD0
description Terpene synthase 2 OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0010334
description alpha-farnesene synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33845: 17188-17702 , PASA_asmbl_33846: 18018-18291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032011_020 0.0 - - alpha-farnesene synthase [Ricinus communis]
2 Hb_023558_010 0.0495277421 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
3 Hb_169136_010 0.0738087846 - - conserved hypothetical protein [Ricinus communis]
4 Hb_022092_100 0.0803508457 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002151_140 0.0817589667 - - PREDICTED: lichenase-2-like [Pyrus x bretschneideri]
6 Hb_000784_050 0.0817900427 - - PREDICTED: auxin-induced protein X10A-like [Nelumbo nucifera]
7 Hb_000280_070 0.0818066471 - - PREDICTED: PCTP-like protein isoform X1 [Jatropha curcas]
8 Hb_000307_080 0.0818982914 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000173_070 0.0819623377 transcription factor TF Family: bHLH PREDICTED: transcription factor MUTE [Jatropha curcas]
10 Hb_003667_030 0.0819847385 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL15 [Jatropha curcas]
11 Hb_003995_040 0.0820131422 - - PREDICTED: tropinone reductase homolog At2g29290-like [Jatropha curcas]
12 Hb_000417_240 0.0820242965 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
13 Hb_000489_050 0.0821664089 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
14 Hb_007975_070 0.0825684183 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
15 Hb_000334_100 0.082588749 - - hypothetical protein JCGZ_16788 [Jatropha curcas]
16 Hb_105767_030 0.0827757802 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000008_100 0.0831677873 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
18 Hb_002391_280 0.0833722696 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
19 Hb_002817_020 0.0834451826 - - -
20 Hb_000221_010 0.0843833237 - - polyprotein [Oryza australiensis]

Gene co-expression network

sample Hb_032011_020 Hb_032011_020 Hb_023558_010 Hb_023558_010 Hb_032011_020--Hb_023558_010 Hb_169136_010 Hb_169136_010 Hb_032011_020--Hb_169136_010 Hb_022092_100 Hb_022092_100 Hb_032011_020--Hb_022092_100 Hb_002151_140 Hb_002151_140 Hb_032011_020--Hb_002151_140 Hb_000784_050 Hb_000784_050 Hb_032011_020--Hb_000784_050 Hb_000280_070 Hb_000280_070 Hb_032011_020--Hb_000280_070 Hb_000417_240 Hb_000417_240 Hb_023558_010--Hb_000417_240 Hb_003995_040 Hb_003995_040 Hb_023558_010--Hb_003995_040 Hb_000173_070 Hb_000173_070 Hb_023558_010--Hb_000173_070 Hb_000307_080 Hb_000307_080 Hb_023558_010--Hb_000307_080 Hb_007975_070 Hb_007975_070 Hb_023558_010--Hb_007975_070 Hb_006142_020 Hb_006142_020 Hb_169136_010--Hb_006142_020 Hb_002837_120 Hb_002837_120 Hb_169136_010--Hb_002837_120 Hb_169136_010--Hb_023558_010 Hb_169136_010--Hb_007975_070 Hb_105767_030 Hb_105767_030 Hb_169136_010--Hb_105767_030 Hb_000853_020 Hb_000853_020 Hb_022092_100--Hb_000853_020 Hb_000691_060 Hb_000691_060 Hb_022092_100--Hb_000691_060 Hb_000175_160 Hb_000175_160 Hb_022092_100--Hb_000175_160 Hb_003667_030 Hb_003667_030 Hb_022092_100--Hb_003667_030 Hb_000489_050 Hb_000489_050 Hb_022092_100--Hb_000489_050 Hb_000334_100 Hb_000334_100 Hb_022092_100--Hb_000334_100 Hb_002151_140--Hb_000784_050 Hb_002151_140--Hb_000280_070 Hb_002151_140--Hb_000307_080 Hb_002151_140--Hb_000173_070 Hb_002151_140--Hb_003995_040 Hb_002151_140--Hb_000417_240 Hb_000784_050--Hb_000280_070 Hb_000784_050--Hb_000307_080 Hb_000784_050--Hb_000173_070 Hb_000784_050--Hb_003995_040 Hb_000784_050--Hb_000417_240 Hb_000280_070--Hb_000307_080 Hb_000280_070--Hb_000173_070 Hb_000280_070--Hb_003995_040 Hb_000280_070--Hb_000417_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0776501 9.99863 2.82658 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0533331 0.0419446 0 0 0

CAGE analysis