Hb_032016_010

Information

Type -
Description -
Location Contig32016: 4042-4801
Sequence    

Annotation

kegg
ID cit:102613465
description probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like
nr
ID XP_006481469.1
description PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DDC6
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029521mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032016_010 0.0 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like isoform X1 [Citrus sinensis]
2 Hb_007533_050 0.0764809957 - - -
3 Hb_009851_090 0.0815970962 - - Protein ABIL2, putative [Ricinus communis]
4 Hb_003311_020 0.0911076852 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003073_030 0.098337873 - - conserved hypothetical protein [Ricinus communis]
6 Hb_040245_010 0.1011361386 - - hypothetical protein CISIN_1g039575mg, partial [Citrus sinensis]
7 Hb_000567_270 0.1048841088 - - hypothetical protein L484_017162 [Morus notabilis]
8 Hb_000644_020 0.109197227 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
9 Hb_000415_080 0.1177259019 - - -
10 Hb_077151_010 0.1309943231 - - ankyrin repeat protein [Bruguiera gymnorhiza]
11 Hb_005678_030 0.132937371 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
12 Hb_003994_070 0.1339960112 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_006455_020 0.1340895042 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
14 Hb_093388_010 0.1378207444 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
15 Hb_014510_030 0.138158038 - - hypothetical protein VITISV_027576 [Vitis vinifera]
16 Hb_155423_010 0.1390191473 - - -
17 Hb_005092_070 0.1405527195 - - Oligopeptide transporter, putative [Ricinus communis]
18 Hb_001856_290 0.1413147859 - - hypothetical protein JCGZ_16255 [Jatropha curcas]
19 Hb_000432_020 0.1434878788 desease resistance Gene Name: Tropomyosin_1 PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
20 Hb_002631_270 0.1446881688 transcription factor TF Family: MYB hypothetical protein POPTR_0005s09930g [Populus trichocarpa]

Gene co-expression network

sample Hb_032016_010 Hb_032016_010 Hb_007533_050 Hb_007533_050 Hb_032016_010--Hb_007533_050 Hb_009851_090 Hb_009851_090 Hb_032016_010--Hb_009851_090 Hb_003311_020 Hb_003311_020 Hb_032016_010--Hb_003311_020 Hb_003073_030 Hb_003073_030 Hb_032016_010--Hb_003073_030 Hb_040245_010 Hb_040245_010 Hb_032016_010--Hb_040245_010 Hb_000567_270 Hb_000567_270 Hb_032016_010--Hb_000567_270 Hb_000432_020 Hb_000432_020 Hb_007533_050--Hb_000432_020 Hb_007533_050--Hb_003311_020 Hb_007533_050--Hb_000567_270 Hb_049285_010 Hb_049285_010 Hb_007533_050--Hb_049285_010 Hb_006455_020 Hb_006455_020 Hb_007533_050--Hb_006455_020 Hb_003994_070 Hb_003994_070 Hb_009851_090--Hb_003994_070 Hb_009851_090--Hb_003311_020 Hb_155423_010 Hb_155423_010 Hb_009851_090--Hb_155423_010 Hb_002631_270 Hb_002631_270 Hb_009851_090--Hb_002631_270 Hb_009851_090--Hb_000567_270 Hb_003311_020--Hb_003994_070 Hb_003311_020--Hb_000567_270 Hb_003311_020--Hb_000432_020 Hb_003073_030--Hb_040245_010 Hb_014510_030 Hb_014510_030 Hb_003073_030--Hb_014510_030 Hb_000415_080 Hb_000415_080 Hb_003073_030--Hb_000415_080 Hb_000199_090 Hb_000199_090 Hb_003073_030--Hb_000199_090 Hb_077151_010 Hb_077151_010 Hb_003073_030--Hb_077151_010 Hb_000627_110 Hb_000627_110 Hb_003073_030--Hb_000627_110 Hb_040245_010--Hb_000415_080 Hb_040245_010--Hb_014510_030 Hb_040245_010--Hb_000199_090 Hb_040245_010--Hb_000627_110 Hb_000644_020 Hb_000644_020 Hb_000567_270--Hb_000644_020 Hb_000567_270--Hb_006455_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.047591 0.0426952 0.123726 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.127091 0.958407

CAGE analysis