Hb_032018_010

Information

Type -
Description -
Location Contig32018: 21-872
Sequence    

Annotation

kegg
ID egr:104447462
description uncharacterized LOC104447462
nr
ID XP_012458081.1
description PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID W9QKF9
description Uncharacterized protein OS=Morus notabilis GN=L484_019698 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032018_010 0.0 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
2 Hb_000062_500 0.0471590909 - - PREDICTED: urease-like [Zea mays]
3 Hb_002837_090 0.2036337799 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
4 Hb_005203_050 0.2087979753 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
5 Hb_000014_130 0.2155676138 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
6 Hb_003772_020 0.2221976425 - - PREDICTED: uncharacterized protein LOC105037131, partial [Elaeis guineensis]
7 Hb_000317_090 0.2302406242 - - hypothetical protein RCOM_1176360 [Ricinus communis]
8 Hb_007978_020 0.2330229054 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
9 Hb_003816_020 0.2509542705 - - hypothetical protein POPTR_0017s05940g [Populus trichocarpa]
10 Hb_041237_010 0.2559930845 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011794_020 0.2602392563 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_004650_090 0.2607657058 - - -
13 Hb_010997_100 0.2617392723 transcription factor TF Family: mTERF -
14 Hb_167316_010 0.2662784836 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1 [Nicotiana sylvestris]
15 Hb_137515_010 0.2786753961 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
16 Hb_061365_010 0.2867764624 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
17 Hb_003609_010 0.2916251964 - - -
18 Hb_001276_010 0.2945794974 desease resistance Gene Name: NB-ARC unnamed protein product [Vitis vinifera]
19 Hb_003398_010 0.2993321105 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
20 Hb_009189_030 0.3076986828 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]

Gene co-expression network

sample Hb_032018_010 Hb_032018_010 Hb_000062_500 Hb_000062_500 Hb_032018_010--Hb_000062_500 Hb_002837_090 Hb_002837_090 Hb_032018_010--Hb_002837_090 Hb_005203_050 Hb_005203_050 Hb_032018_010--Hb_005203_050 Hb_000014_130 Hb_000014_130 Hb_032018_010--Hb_000014_130 Hb_003772_020 Hb_003772_020 Hb_032018_010--Hb_003772_020 Hb_000317_090 Hb_000317_090 Hb_032018_010--Hb_000317_090 Hb_000062_500--Hb_005203_050 Hb_000062_500--Hb_003772_020 Hb_007978_020 Hb_007978_020 Hb_000062_500--Hb_007978_020 Hb_000062_500--Hb_000014_130 Hb_167316_010 Hb_167316_010 Hb_000062_500--Hb_167316_010 Hb_002837_090--Hb_000317_090 Hb_002837_090--Hb_000014_130 Hb_001276_010 Hb_001276_010 Hb_002837_090--Hb_001276_010 Hb_002837_090--Hb_000062_500 Hb_007904_190 Hb_007904_190 Hb_002837_090--Hb_007904_190 Hb_033926_010 Hb_033926_010 Hb_005203_050--Hb_033926_010 Hb_009189_030 Hb_009189_030 Hb_005203_050--Hb_009189_030 Hb_009922_010 Hb_009922_010 Hb_005203_050--Hb_009922_010 Hb_053643_010 Hb_053643_010 Hb_005203_050--Hb_053643_010 Hb_041237_010 Hb_041237_010 Hb_000014_130--Hb_041237_010 Hb_000014_130--Hb_007978_020 Hb_000014_130--Hb_003772_020 Hb_002904_090 Hb_002904_090 Hb_000014_130--Hb_002904_090 Hb_003398_010 Hb_003398_010 Hb_000014_130--Hb_003398_010 Hb_003772_020--Hb_007978_020 Hb_003772_020--Hb_041237_010 Hb_010447_020 Hb_010447_020 Hb_003772_020--Hb_010447_020 Hb_000317_090--Hb_001276_010 Hb_003772_080 Hb_003772_080 Hb_000317_090--Hb_003772_080 Hb_171659_010 Hb_171659_010 Hb_000317_090--Hb_171659_010 Hb_022452_010 Hb_022452_010 Hb_000317_090--Hb_022452_010 Hb_003816_020 Hb_003816_020 Hb_000317_090--Hb_003816_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0375143 0.0763457 0 0 0.0377199 0.135255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis