Hb_032143_020

Information

Type -
Description -
Location Contig32143: 3112-4785
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06310g
description POPTRDRAFT_650010; hypothetical protein
nr
ID XP_002313318.2
description hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
swissprot
ID Q9FLX9
description Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1
trembl
ID B9HNS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06310g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33985: 3105-3597 , PASA_asmbl_33986: 4679-5170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032143_020 0.0 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
2 Hb_000671_130 0.1351235215 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
3 Hb_003207_150 0.1367424248 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
4 Hb_001369_630 0.1581272783 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
5 Hb_007632_100 0.1596131453 transcription factor TF Family: NF-YB ccaat-binding transcription factor subunit A, putative [Ricinus communis]
6 Hb_122636_010 0.1644913413 - - dienelactone hydrolase family protein [Populus trichocarpa]
7 Hb_000696_070 0.1673161715 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
8 Hb_048476_060 0.1678000114 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
9 Hb_004525_040 0.1684546473 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
10 Hb_006351_020 0.171242886 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
11 Hb_002151_060 0.1727148568 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
12 Hb_002157_270 0.1737978311 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
13 Hb_000300_520 0.1744961115 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
14 Hb_000806_130 0.175447777 - - Adenosine kinase 2 [Theobroma cacao]
15 Hb_001216_110 0.1769382505 - - PREDICTED: protein GPR107-like [Jatropha curcas]
16 Hb_069355_010 0.1779063136 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
17 Hb_001366_170 0.1783965069 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
18 Hb_002129_020 0.1790545395 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
19 Hb_001119_070 0.1798306959 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
20 Hb_020805_140 0.1806495115 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]

Gene co-expression network

sample Hb_032143_020 Hb_032143_020 Hb_000671_130 Hb_000671_130 Hb_032143_020--Hb_000671_130 Hb_003207_150 Hb_003207_150 Hb_032143_020--Hb_003207_150 Hb_001369_630 Hb_001369_630 Hb_032143_020--Hb_001369_630 Hb_007632_100 Hb_007632_100 Hb_032143_020--Hb_007632_100 Hb_122636_010 Hb_122636_010 Hb_032143_020--Hb_122636_010 Hb_000696_070 Hb_000696_070 Hb_032143_020--Hb_000696_070 Hb_000671_130--Hb_122636_010 Hb_091349_010 Hb_091349_010 Hb_000671_130--Hb_091349_010 Hb_003207_020 Hb_003207_020 Hb_000671_130--Hb_003207_020 Hb_033152_070 Hb_033152_070 Hb_000671_130--Hb_033152_070 Hb_000107_110 Hb_000107_110 Hb_000671_130--Hb_000107_110 Hb_048476_060 Hb_048476_060 Hb_000671_130--Hb_048476_060 Hb_000177_110 Hb_000177_110 Hb_003207_150--Hb_000177_110 Hb_053709_040 Hb_053709_040 Hb_003207_150--Hb_053709_040 Hb_034726_010 Hb_034726_010 Hb_003207_150--Hb_034726_010 Hb_001366_170 Hb_001366_170 Hb_003207_150--Hb_001366_170 Hb_003207_150--Hb_000671_130 Hb_003207_150--Hb_122636_010 Hb_000935_040 Hb_000935_040 Hb_001369_630--Hb_000935_040 Hb_001369_630--Hb_000696_070 Hb_002007_320 Hb_002007_320 Hb_001369_630--Hb_002007_320 Hb_000808_150 Hb_000808_150 Hb_001369_630--Hb_000808_150 Hb_003371_070 Hb_003371_070 Hb_001369_630--Hb_003371_070 Hb_000049_160 Hb_000049_160 Hb_001369_630--Hb_000049_160 Hb_007632_100--Hb_053709_040 Hb_024074_020 Hb_024074_020 Hb_007632_100--Hb_024074_020 Hb_007632_100--Hb_003207_150 Hb_007632_100--Hb_001366_170 Hb_003058_230 Hb_003058_230 Hb_007632_100--Hb_003058_230 Hb_002660_110 Hb_002660_110 Hb_007632_100--Hb_002660_110 Hb_006634_110 Hb_006634_110 Hb_122636_010--Hb_006634_110 Hb_122636_010--Hb_002660_110 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_122636_010--Hb_100137_010 Hb_002781_050 Hb_002781_050 Hb_000696_070--Hb_002781_050 Hb_000806_130 Hb_000806_130 Hb_000696_070--Hb_000806_130 Hb_001119_070 Hb_001119_070 Hb_000696_070--Hb_001119_070 Hb_001486_350 Hb_001486_350 Hb_000696_070--Hb_001486_350 Hb_026527_010 Hb_026527_010 Hb_000696_070--Hb_026527_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.267612 0.313792 1.25066 5.95867 0.797815 0.224334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.767595 0.602915 0.970813 1.02952 1.60001

CAGE analysis