Hb_032202_110

Information

Type -
Description -
Location Contig32202: 76593-80914
Sequence    

Annotation

kegg
ID pmum:103331294
description zinc finger CCCH domain-containing protein 48-like
nr
ID XP_012083498.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JXM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14472 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34074: 76756-77700 , PASA_asmbl_34075: 76756-78350 , PASA_asmbl_34076: 79516-80564 , PASA_asmbl_34078: 78134-80564 , PASA_asmbl_34079: 78468-78585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_110 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
2 Hb_010738_010 0.0498061716 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_111198_010 0.0599215975 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
4 Hb_000300_360 0.0685087098 - - PREDICTED: exosome component 10 [Jatropha curcas]
5 Hb_011386_040 0.0693960842 - - PREDICTED: uncharacterized protein LOC105639243 isoform X2 [Jatropha curcas]
6 Hb_007982_070 0.0720939258 - - PREDICTED: protein CPR-5 [Jatropha curcas]
7 Hb_000771_180 0.0728151183 - - polypyrimidine tract binding protein, putative [Ricinus communis]
8 Hb_000179_030 0.0739935978 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
9 Hb_031527_020 0.0790235629 - - PREDICTED: pre-mRNA-splicing factor 38B isoform X1 [Jatropha curcas]
10 Hb_000169_130 0.0791101172 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
11 Hb_000406_240 0.0795478573 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
12 Hb_001799_050 0.0798119412 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
13 Hb_006355_010 0.080434957 - - PREDICTED: protein NLRC3 [Jatropha curcas]
14 Hb_008554_120 0.0817164198 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
15 Hb_003633_070 0.0822839406 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
16 Hb_005883_010 0.0850490697 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000224_060 0.0851975121 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
18 Hb_000140_080 0.0868852762 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
19 Hb_000136_090 0.0873261858 - - programmed cell death protein, putative [Ricinus communis]
20 Hb_075745_020 0.087818284 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_032202_110 Hb_032202_110 Hb_010738_010 Hb_010738_010 Hb_032202_110--Hb_010738_010 Hb_111198_010 Hb_111198_010 Hb_032202_110--Hb_111198_010 Hb_000300_360 Hb_000300_360 Hb_032202_110--Hb_000300_360 Hb_011386_040 Hb_011386_040 Hb_032202_110--Hb_011386_040 Hb_007982_070 Hb_007982_070 Hb_032202_110--Hb_007982_070 Hb_000771_180 Hb_000771_180 Hb_032202_110--Hb_000771_180 Hb_000169_130 Hb_000169_130 Hb_010738_010--Hb_000169_130 Hb_005883_010 Hb_005883_010 Hb_010738_010--Hb_005883_010 Hb_010738_010--Hb_111198_010 Hb_000103_100 Hb_000103_100 Hb_010738_010--Hb_000103_100 Hb_000283_130 Hb_000283_130 Hb_010738_010--Hb_000283_130 Hb_031527_020 Hb_031527_020 Hb_111198_010--Hb_031527_020 Hb_003633_070 Hb_003633_070 Hb_111198_010--Hb_003633_070 Hb_002078_110 Hb_002078_110 Hb_111198_010--Hb_002078_110 Hb_005489_080 Hb_005489_080 Hb_111198_010--Hb_005489_080 Hb_000300_360--Hb_007982_070 Hb_001633_040 Hb_001633_040 Hb_000300_360--Hb_001633_040 Hb_000796_190 Hb_000796_190 Hb_000300_360--Hb_000796_190 Hb_140049_020 Hb_140049_020 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_007558_120 Hb_007558_120 Hb_000300_360--Hb_007558_120 Hb_050847_020 Hb_050847_020 Hb_011386_040--Hb_050847_020 Hb_011386_040--Hb_000771_180 Hb_000140_080 Hb_000140_080 Hb_011386_040--Hb_000140_080 Hb_002045_150 Hb_002045_150 Hb_011386_040--Hb_002045_150 Hb_000136_090 Hb_000136_090 Hb_011386_040--Hb_000136_090 Hb_031042_070 Hb_031042_070 Hb_007982_070--Hb_031042_070 Hb_000406_240 Hb_000406_240 Hb_007982_070--Hb_000406_240 Hb_000270_460 Hb_000270_460 Hb_007982_070--Hb_000270_460 Hb_007982_070--Hb_007558_120 Hb_002783_310 Hb_002783_310 Hb_000771_180--Hb_002783_310 Hb_000771_180--Hb_050847_020 Hb_000160_350 Hb_000160_350 Hb_000771_180--Hb_000160_350 Hb_140049_030 Hb_140049_030 Hb_000771_180--Hb_140049_030 Hb_000334_270 Hb_000334_270 Hb_000771_180--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_000771_180--Hb_000664_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4768 17.4754 10.7193 4.8858 13.4348 17.6175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.29883 9.41491 7.6739 9.30783 5.35953

CAGE analysis