Hb_032202_120

Information

Type -
Description -
Location Contig32202: 80893-87322
Sequence    

Annotation

kegg
ID pop:POPTR_0014s07370g
description POPTRDRAFT_244302; SET domain-containing family protein
nr
ID XP_012083495.1
description PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IC82
description SET domain-containing family protein OS=Populus trichocarpa GN=POPTR_0014s07370g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34080: 81138-82558 , PASA_asmbl_34081: 83073-83346 , PASA_asmbl_34083: 85365-86237 , PASA_asmbl_34084: 86425-87300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_120 0.0 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
2 Hb_008103_070 0.0734441888 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
3 Hb_001433_070 0.0741248648 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
4 Hb_005289_040 0.0783709778 - - poly(A) polymerase, putative [Ricinus communis]
5 Hb_012753_170 0.078431839 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
6 Hb_002890_120 0.0792640804 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
7 Hb_005588_090 0.0795991 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
8 Hb_000163_220 0.0817824247 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
9 Hb_171900_070 0.0843556628 - - -
10 Hb_106552_020 0.0851171584 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
11 Hb_143629_150 0.0860605652 - - PREDICTED: flap endonuclease 1 isoform X2 [Prunus mume]
12 Hb_002110_230 0.090716299 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
13 Hb_000329_590 0.0907824593 - - catalytic, putative [Ricinus communis]
14 Hb_000260_680 0.0932077881 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
15 Hb_079526_030 0.0950467599 - - PREDICTED: uncharacterized protein LOC105638120 [Jatropha curcas]
16 Hb_004122_040 0.0951268716 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
17 Hb_001821_160 0.0955048877 - - serine/arginine rich splicing factor, putative [Ricinus communis]
18 Hb_005779_010 0.0962024592 - - catalytic, putative [Ricinus communis]
19 Hb_154580_010 0.0963219348 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
20 Hb_002374_010 0.0967446619 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_032202_120 Hb_032202_120 Hb_008103_070 Hb_008103_070 Hb_032202_120--Hb_008103_070 Hb_001433_070 Hb_001433_070 Hb_032202_120--Hb_001433_070 Hb_005289_040 Hb_005289_040 Hb_032202_120--Hb_005289_040 Hb_012753_170 Hb_012753_170 Hb_032202_120--Hb_012753_170 Hb_002890_120 Hb_002890_120 Hb_032202_120--Hb_002890_120 Hb_005588_090 Hb_005588_090 Hb_032202_120--Hb_005588_090 Hb_008103_070--Hb_012753_170 Hb_008103_070--Hb_002890_120 Hb_008103_070--Hb_001433_070 Hb_008103_070--Hb_005588_090 Hb_002175_030 Hb_002175_030 Hb_008103_070--Hb_002175_030 Hb_079526_030 Hb_079526_030 Hb_001433_070--Hb_079526_030 Hb_001089_110 Hb_001089_110 Hb_001433_070--Hb_001089_110 Hb_001433_070--Hb_002175_030 Hb_002110_230 Hb_002110_230 Hb_001433_070--Hb_002110_230 Hb_003878_110 Hb_003878_110 Hb_001433_070--Hb_003878_110 Hb_183612_040 Hb_183612_040 Hb_001433_070--Hb_183612_040 Hb_003638_090 Hb_003638_090 Hb_005289_040--Hb_003638_090 Hb_005289_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_005289_040--Hb_000398_080 Hb_002805_190 Hb_002805_190 Hb_005289_040--Hb_002805_190 Hb_000134_270 Hb_000134_270 Hb_005289_040--Hb_000134_270 Hb_154580_010 Hb_154580_010 Hb_005289_040--Hb_154580_010 Hb_001821_160 Hb_001821_160 Hb_012753_170--Hb_001821_160 Hb_004785_100 Hb_004785_100 Hb_012753_170--Hb_004785_100 Hb_006960_050 Hb_006960_050 Hb_012753_170--Hb_006960_050 Hb_012753_170--Hb_001433_070 Hb_012753_170--Hb_002175_030 Hb_000648_080 Hb_000648_080 Hb_002890_120--Hb_000648_080 Hb_000236_400 Hb_000236_400 Hb_002890_120--Hb_000236_400 Hb_000398_020 Hb_000398_020 Hb_002890_120--Hb_000398_020 Hb_000710_040 Hb_000710_040 Hb_002890_120--Hb_000710_040 Hb_004267_040 Hb_004267_040 Hb_005588_090--Hb_004267_040 Hb_116349_070 Hb_116349_070 Hb_005588_090--Hb_116349_070 Hb_005588_090--Hb_004785_100 Hb_000089_120 Hb_000089_120 Hb_005588_090--Hb_000089_120 Hb_005588_090--Hb_001821_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.16361 5.0929 6.90567 4.05627 7.08943 6.15862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.27863 5.27318 1.23872 6.33293 3.56051

CAGE analysis