Hb_032202_170

Information

Type -
Description -
Location Contig32202: 100974-101501
Sequence    

Annotation

kegg
ID rcu:RCOM_1613720
description hypothetical protein
nr
ID XP_012083491.1
description PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RDK1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1613720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34090: 102028-106043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_170 0.0 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
2 Hb_000787_090 0.1052990539 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
3 Hb_132697_010 0.1086964271 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004724_320 0.1140643064 - - Vesicle-associated membrane protein, putative [Ricinus communis]
5 Hb_010368_020 0.1262845051 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
6 Hb_003656_110 0.127658025 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
7 Hb_000861_070 0.1286606044 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012762_020 0.1295772076 - - (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]
9 Hb_075481_030 0.1322716895 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
10 Hb_001310_110 0.1324178058 - - unnamed protein product [Coffea canephora]
11 Hb_002431_020 0.1357555906 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
12 Hb_005365_020 0.1358404629 - - hypothetical protein JCGZ_15105 [Jatropha curcas]
13 Hb_002499_070 0.136674483 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
14 Hb_005016_090 0.1393092118 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
15 Hb_009775_020 0.1393493634 - - PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
16 Hb_035123_010 0.1398318326 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_002351_020 0.1402240535 - - PREDICTED: rRNA methyltransferase 3B, mitochondrial [Jatropha curcas]
18 Hb_000656_250 0.1410596581 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
19 Hb_097783_020 0.1413676466 - - PREDICTED: small G protein signaling modulator 1 [Jatropha curcas]
20 Hb_005489_080 0.1417563662 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_032202_170 Hb_032202_170 Hb_000787_090 Hb_000787_090 Hb_032202_170--Hb_000787_090 Hb_132697_010 Hb_132697_010 Hb_032202_170--Hb_132697_010 Hb_004724_320 Hb_004724_320 Hb_032202_170--Hb_004724_320 Hb_010368_020 Hb_010368_020 Hb_032202_170--Hb_010368_020 Hb_003656_110 Hb_003656_110 Hb_032202_170--Hb_003656_110 Hb_000861_070 Hb_000861_070 Hb_032202_170--Hb_000861_070 Hb_002431_020 Hb_002431_020 Hb_000787_090--Hb_002431_020 Hb_000787_090--Hb_132697_010 Hb_001347_040 Hb_001347_040 Hb_000787_090--Hb_001347_040 Hb_000787_090--Hb_004724_320 Hb_001502_060 Hb_001502_060 Hb_000787_090--Hb_001502_060 Hb_000832_090 Hb_000832_090 Hb_000787_090--Hb_000832_090 Hb_017987_020 Hb_017987_020 Hb_132697_010--Hb_017987_020 Hb_132697_010--Hb_002431_020 Hb_075481_030 Hb_075481_030 Hb_132697_010--Hb_075481_030 Hb_000933_020 Hb_000933_020 Hb_132697_010--Hb_000933_020 Hb_132697_010--Hb_000861_070 Hb_004724_320--Hb_000861_070 Hb_004724_320--Hb_075481_030 Hb_012762_020 Hb_012762_020 Hb_004724_320--Hb_012762_020 Hb_000008_330 Hb_000008_330 Hb_004724_320--Hb_000008_330 Hb_000521_260 Hb_000521_260 Hb_004724_320--Hb_000521_260 Hb_005505_050 Hb_005505_050 Hb_004724_320--Hb_005505_050 Hb_005016_090 Hb_005016_090 Hb_010368_020--Hb_005016_090 Hb_001564_130 Hb_001564_130 Hb_010368_020--Hb_001564_130 Hb_000771_080 Hb_000771_080 Hb_010368_020--Hb_000771_080 Hb_000670_020 Hb_000670_020 Hb_010368_020--Hb_000670_020 Hb_001348_070 Hb_001348_070 Hb_010368_020--Hb_001348_070 Hb_001195_760 Hb_001195_760 Hb_010368_020--Hb_001195_760 Hb_000028_040 Hb_000028_040 Hb_003656_110--Hb_000028_040 Hb_003097_190 Hb_003097_190 Hb_003656_110--Hb_003097_190 Hb_004512_020 Hb_004512_020 Hb_003656_110--Hb_004512_020 Hb_011457_160 Hb_011457_160 Hb_003656_110--Hb_011457_160 Hb_002890_180 Hb_002890_180 Hb_003656_110--Hb_002890_180 Hb_002890_030 Hb_002890_030 Hb_000861_070--Hb_002890_030 Hb_000861_070--Hb_075481_030 Hb_000861_070--Hb_000521_260 Hb_000861_070--Hb_000008_330 Hb_004162_280 Hb_004162_280 Hb_000861_070--Hb_004162_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.6948 28.6346 13.4952 20.8849 63.1756 23.403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4015 29.838 14.8806 7.91072 10.4093

CAGE analysis