Hb_032202_180

Information

Type -
Description -
Location Contig32202: 102002-106006
Sequence    

Annotation

kegg
ID vvi:100252411
description protein-ribulosamine 3-kinase, chloroplastic
nr
ID XP_012083489.1
description PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Jatropha curcas]
swissprot
ID Q9LEW8
description Protein-ribulosamine 3-kinase, chloroplastic OS=Arabidopsis thaliana GN=At3g61080 PE=1 SV=2
trembl
ID A0A067KA61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14465 PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein-ribulosamine 3- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34090: 102028-106043
cDNA
(Sanger)
(ID:Location)		 017_D01.ab1: 103332-106043 , 018_O02.ab1: 103315-106041 , 052_O24.ab1: 104379-106041

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_180 0.0 - - PREDICTED: protein-ribulosamine 3-kinase, chloroplastic [Jatropha curcas]
2 Hb_029695_110 0.104958918 - - hypothetical protein CICLE_v10021605mg [Citrus clementina]
3 Hb_001022_030 0.1248076583 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
4 Hb_001205_300 0.1250715296 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
5 Hb_000959_030 0.1300901736 - - mitochondrial carrier protein, putative [Ricinus communis]
6 Hb_003752_070 0.1302494078 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
7 Hb_003728_100 0.1304322232 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
8 Hb_005276_130 0.1319020198 - - conserved hypothetical protein [Ricinus communis]
9 Hb_014720_070 0.1319690695 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
10 Hb_001097_100 0.1326773755 - - Chaperone DnaJ-domain superfamily protein [Theobroma cacao]
11 Hb_000284_130 0.1331758391 - - sodium-bile acid cotransporter, putative [Ricinus communis]
12 Hb_000364_100 0.1367655325 - - PREDICTED: uncharacterized protein LOC105639739 [Jatropha curcas]
13 Hb_000051_060 0.1368653671 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003462_070 0.1392312996 - - arsenical pump-driving atpase, putative [Ricinus communis]
15 Hb_001348_190 0.1413915451 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
16 Hb_000920_030 0.1418607581 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_158092_030 0.1422224203 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic [Jatropha curcas]
18 Hb_002874_180 0.1433021719 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
19 Hb_001956_040 0.1436351518 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_021732_010 0.1442667964 - - biotin carboxylase [Vernicia fordii]

Gene co-expression network

sample Hb_032202_180 Hb_032202_180 Hb_029695_110 Hb_029695_110 Hb_032202_180--Hb_029695_110 Hb_001022_030 Hb_001022_030 Hb_032202_180--Hb_001022_030 Hb_001205_300 Hb_001205_300 Hb_032202_180--Hb_001205_300 Hb_000959_030 Hb_000959_030 Hb_032202_180--Hb_000959_030 Hb_003752_070 Hb_003752_070 Hb_032202_180--Hb_003752_070 Hb_003728_100 Hb_003728_100 Hb_032202_180--Hb_003728_100 Hb_000920_030 Hb_000920_030 Hb_029695_110--Hb_000920_030 Hb_029695_110--Hb_001205_300 Hb_029695_110--Hb_000959_030 Hb_003462_070 Hb_003462_070 Hb_029695_110--Hb_003462_070 Hb_002304_080 Hb_002304_080 Hb_029695_110--Hb_002304_080 Hb_000723_100 Hb_000723_100 Hb_029695_110--Hb_000723_100 Hb_002874_180 Hb_002874_180 Hb_001022_030--Hb_002874_180 Hb_156850_100 Hb_156850_100 Hb_001022_030--Hb_156850_100 Hb_001022_030--Hb_003728_100 Hb_000539_050 Hb_000539_050 Hb_001022_030--Hb_000539_050 Hb_005539_010 Hb_005539_010 Hb_001022_030--Hb_005539_010 Hb_009225_020 Hb_009225_020 Hb_001022_030--Hb_009225_020 Hb_001205_300--Hb_003462_070 Hb_031284_070 Hb_031284_070 Hb_001205_300--Hb_031284_070 Hb_000046_330 Hb_000046_330 Hb_001205_300--Hb_000046_330 Hb_000740_050 Hb_000740_050 Hb_001205_300--Hb_000740_050 Hb_001205_300--Hb_009225_020 Hb_000948_170 Hb_000948_170 Hb_001205_300--Hb_000948_170 Hb_011021_020 Hb_011021_020 Hb_000959_030--Hb_011021_020 Hb_001922_170 Hb_001922_170 Hb_000959_030--Hb_001922_170 Hb_005405_020 Hb_005405_020 Hb_000959_030--Hb_005405_020 Hb_000959_030--Hb_001205_300 Hb_000959_030--Hb_009225_020 Hb_021650_010 Hb_021650_010 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_006787_090 Hb_006787_090 Hb_003752_070--Hb_006787_090 Hb_005162_110 Hb_005162_110 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_010174_090 Hb_010174_090 Hb_003752_070--Hb_010174_090 Hb_003728_100--Hb_009225_020 Hb_000207_300 Hb_000207_300 Hb_003728_100--Hb_000207_300 Hb_000221_140 Hb_000221_140 Hb_003728_100--Hb_000221_140 Hb_003728_100--Hb_003462_070 Hb_003728_100--Hb_005405_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.5323 13.2677 92.6527 27.3898 37.9489 40.1532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.8758 22.138 15.5691 15.6508 54.0773

CAGE analysis