Hb_032202_190

Information

Type -
Description -
Location Contig32202: 106201-107480
Sequence    

Annotation

kegg
ID tcc:TCM_005427
description Xyloglucan endotransglucosylase/hydrolase protein 27
nr
ID XP_012489857.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
swissprot
ID Q8LDS2
description Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2
trembl
ID A0A0D2TC46
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G095000 PE=4 SV=1
Gene Ontology
ID GO:0004553
description probable xyloglucan endotransglucosylase hydrolase protein 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34091: 106243-107455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032202_190 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
2 Hb_005663_060 0.0493791365 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
3 Hb_004254_120 0.0524579354 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000876_070 0.0534583847 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
5 Hb_005618_170 0.0566678115 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
6 Hb_005305_080 0.0572614155 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
7 Hb_007691_030 0.0574062393 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
8 Hb_003092_040 0.0585187953 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
9 Hb_005779_060 0.0637328008 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
10 Hb_002739_100 0.0642653764 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
11 Hb_001902_140 0.0689119666 - - PREDICTED: uncharacterized protein LOC105648457 isoform X2 [Jatropha curcas]
12 Hb_012053_070 0.0695021264 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
13 Hb_003057_100 0.0695280445 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
14 Hb_000777_040 0.0697659359 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
15 Hb_172426_040 0.0701970618 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
16 Hb_003125_010 0.0709092842 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
17 Hb_003050_220 0.0717333144 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
18 Hb_010504_020 0.0726849098 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_000504_140 0.0730116169 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 26, chloroplastic-like [Jatropha curcas]
20 Hb_009838_080 0.0732603452 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_032202_190 Hb_032202_190 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_004254_120 Hb_004254_120 Hb_032202_190--Hb_004254_120 Hb_000876_070 Hb_000876_070 Hb_032202_190--Hb_000876_070 Hb_005618_170 Hb_005618_170 Hb_032202_190--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_032202_190--Hb_005305_080 Hb_007691_030 Hb_007691_030 Hb_032202_190--Hb_007691_030 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_006922_100 Hb_006922_100 Hb_005663_060--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_005663_060--Hb_007441_120 Hb_002016_110 Hb_002016_110 Hb_005663_060--Hb_002016_110 Hb_000409_020 Hb_000409_020 Hb_005663_060--Hb_000409_020 Hb_004254_120--Hb_005618_170 Hb_004254_120--Hb_005305_080 Hb_000206_210 Hb_000206_210 Hb_004254_120--Hb_000206_210 Hb_004254_120--Hb_000876_070 Hb_000928_210 Hb_000928_210 Hb_004254_120--Hb_000928_210 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_000876_070--Hb_007691_030 Hb_000876_070--Hb_005618_170 Hb_005618_170--Hb_005305_080 Hb_007416_320 Hb_007416_320 Hb_005618_170--Hb_007416_320 Hb_000085_050 Hb_000085_050 Hb_005618_170--Hb_000085_050 Hb_010504_020 Hb_010504_020 Hb_005305_080--Hb_010504_020 Hb_000510_130 Hb_000510_130 Hb_005305_080--Hb_000510_130 Hb_005305_080--Hb_000876_070 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_007691_030--Hb_002739_100 Hb_007691_030--Hb_003092_040 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.3661 29.562 29.8881 34.3812 47.3623 52.2207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.0257 66.5304 63.1209 37.857 34.1006

CAGE analysis